Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0576 and EX28DRAFT_0577 are separated by 138 nucleotides EX28DRAFT_0577 and EX28DRAFT_0578 overlap by 4 nucleotides
EX28DRAFT_0576: EX28DRAFT_0576 - Siderophore synthetase component, at 573,902 to 575,644
_0576
EX28DRAFT_0577: EX28DRAFT_0577 - Arabinose efflux permease, at 575,783 to 576,994
_0577
EX28DRAFT_0578: EX28DRAFT_0578 - Uncharacterized protein conserved in bacteria, at 576,991 to 577,788
_0578
Position (kb) 575
576
577 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 574.801 kb on + strand, within EX28DRAFT_0576 at 574.801 kb on + strand, within EX28DRAFT_0576 at 574.801 kb on + strand, within EX28DRAFT_0576 at 574.828 kb on - strand, within EX28DRAFT_0576 at 575.472 kb on + strand at 575.644 kb on + strand at 575.644 kb on + strand at 575.645 kb on - strand at 575.645 kb on - strand at 575.651 kb on - strand at 575.651 kb on - strand at 575.723 kb on + strand at 575.768 kb on + strand at 575.768 kb on + strand at 575.768 kb on + strand at 575.769 kb on - strand at 575.769 kb on - strand at 575.769 kb on - strand at 575.847 kb on + strand at 575.848 kb on - strand at 575.860 kb on - strand at 575.863 kb on - strand at 576.019 kb on + strand, within EX28DRAFT_0577 at 576.019 kb on + strand, within EX28DRAFT_0577 at 576.020 kb on - strand, within EX28DRAFT_0577 at 576.116 kb on + strand, within EX28DRAFT_0577 at 576.117 kb on - strand, within EX28DRAFT_0577 at 576.719 kb on + strand, within EX28DRAFT_0577 at 577.359 kb on + strand, within EX28DRAFT_0578 at 577.515 kb on + strand, within EX28DRAFT_0578 at 577.515 kb on + strand, within EX28DRAFT_0578 at 577.515 kb on + strand, within EX28DRAFT_0578 at 577.516 kb on - strand, within EX28DRAFT_0578 at 577.696 kb on - strand, within EX28DRAFT_0578 at 577.784 kb on - strand at 577.843 kb on - strand at 577.885 kb on + strand at 577.890 kb on + strand at 577.891 kb on - strand at 577.899 kb on + strand at 577.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 574,801 + EX28DRAFT_0576 0.52 +0.3 574,801 + EX28DRAFT_0576 0.52 -0.6 574,801 + EX28DRAFT_0576 0.52 +0.4 574,828 - EX28DRAFT_0576 0.53 +0.6 575,472 + +1.5 575,644 + -0.2 575,644 + -1.4 575,645 - +0.1 575,645 - -0.7 575,651 - -1.2 575,651 - -1.4 575,723 + -0.2 575,768 + -0.8 575,768 + -0.1 575,768 + -0.0 575,769 - -0.9 575,769 - -0.4 575,769 - +3.9 575,847 + +0.1 575,848 - +3.6 575,860 - -0.7 575,863 - -0.0 576,019 + EX28DRAFT_0577 0.19 -1.1 576,019 + EX28DRAFT_0577 0.19 -1.4 576,020 - EX28DRAFT_0577 0.20 -0.2 576,116 + EX28DRAFT_0577 0.27 -3.0 576,117 - EX28DRAFT_0577 0.28 -3.8 576,719 + EX28DRAFT_0577 0.77 -0.4 577,359 + EX28DRAFT_0578 0.46 -0.5 577,515 + EX28DRAFT_0578 0.66 -0.0 577,515 + EX28DRAFT_0578 0.66 +0.3 577,515 + EX28DRAFT_0578 0.66 -1.0 577,516 - EX28DRAFT_0578 0.66 +0.3 577,696 - EX28DRAFT_0578 0.88 -1.0 577,784 - -0.1 577,843 - -0.3 577,885 + -0.4 577,890 + +0.3 577,891 - +1.1 577,899 + -0.9 577,900 - +0.5
Or see this region's nucleotide sequence