Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0545

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0544 and EX28DRAFT_0545 are separated by 122 nucleotidesEX28DRAFT_0545 and EX28DRAFT_0546 are separated by 210 nucleotides EX28DRAFT_0544: EX28DRAFT_0544 - Amino acid transporters, at 537,549 to 538,907 _0544 EX28DRAFT_0545: EX28DRAFT_0545 - Exodeoxyribonuclease I subunit C (EC 3.1.11.1), at 539,030 to 540,454 _0545 EX28DRAFT_0546: EX28DRAFT_0546 - D-alanyl-D-alanine carboxypeptidase, at 540,665 to 541,831 _0546 Position (kb) 539 540 541Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 538.295 kb on + strand, within EX28DRAFT_0544at 538.308 kb on + strand, within EX28DRAFT_0544at 538.383 kb on + strand, within EX28DRAFT_0544at 538.383 kb on + strand, within EX28DRAFT_0544at 538.383 kb on + strand, within EX28DRAFT_0544at 538.384 kb on - strand, within EX28DRAFT_0544at 538.438 kb on + strand, within EX28DRAFT_0544at 538.485 kb on + strand, within EX28DRAFT_0544at 538.738 kb on - strand, within EX28DRAFT_0544at 538.845 kb on + strandat 538.846 kb on - strandat 538.891 kb on - strandat 538.943 kb on + strandat 538.944 kb on - strandat 538.944 kb on - strandat 538.944 kb on - strandat 538.944 kb on - strandat 538.944 kb on - strandat 538.947 kb on + strandat 538.948 kb on - strandat 539.019 kb on - strandat 539.019 kb on - strandat 539.019 kb on - strandat 539.036 kb on + strandat 539.036 kb on + strandat 539.036 kb on + strandat 539.049 kb on + strandat 539.130 kb on + strandat 539.135 kb on - strandat 539.286 kb on - strand, within EX28DRAFT_0545at 539.546 kb on - strand, within EX28DRAFT_0545at 539.551 kb on + strand, within EX28DRAFT_0545at 539.731 kb on + strand, within EX28DRAFT_0545at 540.462 kb on - strandat 540.489 kb on - strandat 540.489 kb on - strandat 540.493 kb on + strandat 540.597 kb on - strandat 540.597 kb on - strandat 540.660 kb on + strandat 540.660 kb on + strandat 540.660 kb on + strandat 540.661 kb on - strandat 540.661 kb on - strandat 540.841 kb on + strand, within EX28DRAFT_0546at 540.875 kb on + strand, within EX28DRAFT_0546at 540.876 kb on - strand, within EX28DRAFT_0546at 541.259 kb on + strand, within EX28DRAFT_0546at 541.259 kb on + strand, within EX28DRAFT_0546at 541.264 kb on + strand, within EX28DRAFT_0546at 541.264 kb on + strand, within EX28DRAFT_0546at 541.264 kb on + strand, within EX28DRAFT_0546at 541.265 kb on - strand, within EX28DRAFT_0546at 541.265 kb on - strand, within EX28DRAFT_0546at 541.265 kb on - strand, within EX28DRAFT_0546at 541.265 kb on - strand, within EX28DRAFT_0546at 541.268 kb on + strand, within EX28DRAFT_0546at 541.268 kb on + strand, within EX28DRAFT_0546at 541.268 kb on + strand, within EX28DRAFT_0546at 541.269 kb on - strand, within EX28DRAFT_0546at 541.271 kb on - strand, within EX28DRAFT_0546at 541.333 kb on + strand, within EX28DRAFT_0546at 541.369 kb on + strand, within EX28DRAFT_0546at 541.369 kb on + strand, within EX28DRAFT_0546at 541.370 kb on - strand, within EX28DRAFT_0546

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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538,295 + EX28DRAFT_0544 0.55 +0.1
538,308 + EX28DRAFT_0544 0.56 +0.2
538,383 + EX28DRAFT_0544 0.61 -1.0
538,383 + EX28DRAFT_0544 0.61 -0.0
538,383 + EX28DRAFT_0544 0.61 +0.3
538,384 - EX28DRAFT_0544 0.61 +1.1
538,438 + EX28DRAFT_0544 0.65 -1.1
538,485 + EX28DRAFT_0544 0.69 +0.8
538,738 - EX28DRAFT_0544 0.87 -3.5
538,845 + +0.2
538,846 - +0.1
538,891 - -0.3
538,943 + +0.5
538,944 - -3.4
538,944 - -1.7
538,944 - -1.4
538,944 - -0.6
538,944 - +0.8
538,947 + +0.5
538,948 - +0.5
539,019 - +0.3
539,019 - -0.1
539,019 - -0.2
539,036 + -0.8
539,036 + -0.7
539,036 + +0.8
539,049 + -2.6
539,130 + -2.5
539,135 - -2.5
539,286 - EX28DRAFT_0545 0.18 -1.4
539,546 - EX28DRAFT_0545 0.36 -1.6
539,551 + EX28DRAFT_0545 0.37 -2.0
539,731 + EX28DRAFT_0545 0.49 -3.5
540,462 - -0.4
540,489 - -0.4
540,489 - +0.4
540,493 + +0.8
540,597 - -0.3
540,597 - -0.0
540,660 + -0.7
540,660 + -0.7
540,660 + +0.7
540,661 - +0.2
540,661 - +0.1
540,841 + EX28DRAFT_0546 0.15 -0.4
540,875 + EX28DRAFT_0546 0.18 +0.1
540,876 - EX28DRAFT_0546 0.18 -1.3
541,259 + EX28DRAFT_0546 0.51 -0.6
541,259 + EX28DRAFT_0546 0.51 -0.2
541,264 + EX28DRAFT_0546 0.51 -0.6
541,264 + EX28DRAFT_0546 0.51 +0.3
541,264 + EX28DRAFT_0546 0.51 -0.9
541,265 - EX28DRAFT_0546 0.51 +0.3
541,265 - EX28DRAFT_0546 0.51 +0.2
541,265 - EX28DRAFT_0546 0.51 -0.1
541,265 - EX28DRAFT_0546 0.51 +0.2
541,268 + EX28DRAFT_0546 0.52 +1.5
541,268 + EX28DRAFT_0546 0.52 -0.1
541,268 + EX28DRAFT_0546 0.52 -0.3
541,269 - EX28DRAFT_0546 0.52 +2.2
541,271 - EX28DRAFT_0546 0.52 -0.1
541,333 + EX28DRAFT_0546 0.57 +0.3
541,369 + EX28DRAFT_0546 0.60 +0.3
541,369 + EX28DRAFT_0546 0.60 +0.3
541,370 - EX28DRAFT_0546 0.60 +0.8

Or see this region's nucleotide sequence