Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0495 and EX28DRAFT_0496 are separated by 74 nucleotides EX28DRAFT_0496 and EX28DRAFT_0497 overlap by 1 nucleotides EX28DRAFT_0497 and EX28DRAFT_0498 overlap by 4 nucleotides
EX28DRAFT_0495: EX28DRAFT_0495 - capsular exopolysaccharide family, at 486,114 to 488,276
_0495
EX28DRAFT_0496: EX28DRAFT_0496 - colanic acid biosynthesis glycosyl transferase WcaA, at 488,351 to 489,214
_0496
EX28DRAFT_0497: EX28DRAFT_0497 - colanic acid biosynthesis acetyltransferase WcaB, at 489,214 to 489,705
_0497
EX28DRAFT_0498: EX28DRAFT_0498 - colanic acid biosynthesis glycosyl transferase WcaC, at 489,702 to 490,919
_0498
Position (kb) 489
490 Strain fitness (log2 ratio) -2
-1
0
1
2 at 488.244 kb on + strand at 488.256 kb on + strand at 488.259 kb on - strand at 488.274 kb on + strand at 488.402 kb on + strand at 488.403 kb on - strand at 488.565 kb on - strand, within EX28DRAFT_0496 at 488.565 kb on - strand, within EX28DRAFT_0496 at 488.582 kb on - strand, within EX28DRAFT_0496 at 488.617 kb on + strand, within EX28DRAFT_0496 at 488.618 kb on - strand, within EX28DRAFT_0496 at 488.732 kb on + strand, within EX28DRAFT_0496 at 488.744 kb on + strand, within EX28DRAFT_0496 at 488.744 kb on + strand, within EX28DRAFT_0496 at 488.745 kb on - strand, within EX28DRAFT_0496 at 488.745 kb on - strand, within EX28DRAFT_0496 at 488.745 kb on - strand, within EX28DRAFT_0496 at 488.808 kb on - strand, within EX28DRAFT_0496 at 488.825 kb on + strand, within EX28DRAFT_0496 at 488.825 kb on + strand, within EX28DRAFT_0496 at 488.919 kb on - strand, within EX28DRAFT_0496 at 488.949 kb on - strand, within EX28DRAFT_0496 at 489.094 kb on + strand, within EX28DRAFT_0496 at 489.130 kb on + strand at 489.130 kb on + strand at 489.212 kb on + strand at 489.212 kb on + strand at 489.213 kb on - strand at 489.330 kb on + strand, within EX28DRAFT_0497 at 489.606 kb on + strand, within EX28DRAFT_0497 at 489.609 kb on + strand, within EX28DRAFT_0497 at 489.699 kb on + strand at 489.699 kb on + strand at 489.700 kb on - strand at 489.700 kb on - strand at 489.720 kb on - strand at 489.720 kb on - strand at 489.725 kb on - strand at 489.806 kb on + strand at 490.017 kb on + strand, within EX28DRAFT_0498 at 490.017 kb on + strand, within EX28DRAFT_0498 at 490.018 kb on - strand, within EX28DRAFT_0498 at 490.018 kb on - strand, within EX28DRAFT_0498 at 490.136 kb on + strand, within EX28DRAFT_0498 at 490.163 kb on + strand, within EX28DRAFT_0498 at 490.163 kb on + strand, within EX28DRAFT_0498 at 490.284 kb on - strand, within EX28DRAFT_0498 at 490.284 kb on - strand, within EX28DRAFT_0498 at 490.349 kb on + strand, within EX28DRAFT_0498 at 490.369 kb on + strand, within EX28DRAFT_0498 at 490.652 kb on + strand, within EX28DRAFT_0498
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 488,244 + -0.3 488,256 + +0.1 488,259 - -0.3 488,274 + -2.2 488,402 + -0.5 488,403 - +0.3 488,565 - EX28DRAFT_0496 0.25 -0.4 488,565 - EX28DRAFT_0496 0.25 -0.2 488,582 - EX28DRAFT_0496 0.27 -0.3 488,617 + EX28DRAFT_0496 0.31 -0.2 488,618 - EX28DRAFT_0496 0.31 +0.0 488,732 + EX28DRAFT_0496 0.44 -0.7 488,744 + EX28DRAFT_0496 0.45 -1.6 488,744 + EX28DRAFT_0496 0.45 -0.8 488,745 - EX28DRAFT_0496 0.46 -2.5 488,745 - EX28DRAFT_0496 0.46 +0.2 488,745 - EX28DRAFT_0496 0.46 -0.1 488,808 - EX28DRAFT_0496 0.53 -0.1 488,825 + EX28DRAFT_0496 0.55 +0.3 488,825 + EX28DRAFT_0496 0.55 -0.2 488,919 - EX28DRAFT_0496 0.66 -0.4 488,949 - EX28DRAFT_0496 0.69 -1.2 489,094 + EX28DRAFT_0496 0.86 +0.5 489,130 + +0.3 489,130 + +1.8 489,212 + +0.5 489,212 + -0.4 489,213 - +0.4 489,330 + EX28DRAFT_0497 0.24 +0.4 489,606 + EX28DRAFT_0497 0.80 +0.4 489,609 + EX28DRAFT_0497 0.80 +0.7 489,699 + -0.8 489,699 + +0.2 489,700 - +0.7 489,700 - -0.2 489,720 - +1.2 489,720 - -0.6 489,725 - +0.5 489,806 + +0.3 490,017 + EX28DRAFT_0498 0.26 -0.1 490,017 + EX28DRAFT_0498 0.26 +0.3 490,018 - EX28DRAFT_0498 0.26 -0.8 490,018 - EX28DRAFT_0498 0.26 -0.2 490,136 + EX28DRAFT_0498 0.36 +0.1 490,163 + EX28DRAFT_0498 0.38 -1.0 490,163 + EX28DRAFT_0498 0.38 +0.2 490,284 - EX28DRAFT_0498 0.48 -1.4 490,284 - EX28DRAFT_0498 0.48 -1.3 490,349 + EX28DRAFT_0498 0.53 -0.1 490,369 + EX28DRAFT_0498 0.55 -0.3 490,652 + EX28DRAFT_0498 0.78 +1.1
Or see this region's nucleotide sequence