Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0478 and EX28DRAFT_0479 are separated by 168 nucleotides EX28DRAFT_0479 and EX28DRAFT_0480 overlap by 4 nucleotides
EX28DRAFT_0478: EX28DRAFT_0478 - Collagenase and related proteases, at 460,275 to 461,636
_0478
EX28DRAFT_0479: EX28DRAFT_0479 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 461,805 to 462,527
_0479
EX28DRAFT_0480: EX28DRAFT_0480 - Signal transduction histidine kinase, at 462,524 to 463,927
_0480
Position (kb) 461
462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 460.885 kb on + strand, within EX28DRAFT_0478 at 461.631 kb on - strand at 461.724 kb on + strand at 461.725 kb on - strand at 461.725 kb on - strand at 461.746 kb on - strand at 461.751 kb on + strand at 461.752 kb on - strand at 461.787 kb on - strand at 461.787 kb on - strand at 461.807 kb on - strand at 461.851 kb on + strand at 461.852 kb on - strand at 462.209 kb on - strand, within EX28DRAFT_0479 at 462.209 kb on - strand, within EX28DRAFT_0479 at 462.209 kb on - strand, within EX28DRAFT_0479 at 462.342 kb on + strand, within EX28DRAFT_0479 at 462.382 kb on + strand, within EX28DRAFT_0479 at 462.382 kb on + strand, within EX28DRAFT_0479 at 462.383 kb on - strand, within EX28DRAFT_0479 at 462.439 kb on - strand, within EX28DRAFT_0479 at 462.442 kb on + strand, within EX28DRAFT_0479 at 462.528 kb on - strand at 462.528 kb on - strand at 462.539 kb on + strand at 462.557 kb on + strand at 462.557 kb on + strand at 462.558 kb on - strand at 462.563 kb on + strand at 462.564 kb on - strand at 462.564 kb on - strand at 462.568 kb on + strand at 462.569 kb on - strand at 462.617 kb on - strand at 462.980 kb on - strand, within EX28DRAFT_0480 at 462.980 kb on - strand, within EX28DRAFT_0480
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 460,885 + EX28DRAFT_0478 0.45 +1.7 461,631 - +2.5 461,724 + +0.5 461,725 - +0.4 461,725 - -0.2 461,746 - +0.2 461,751 + -0.2 461,752 - -0.6 461,787 - -1.2 461,787 - -2.1 461,807 - -1.5 461,851 + -0.6 461,852 - -0.5 462,209 - EX28DRAFT_0479 0.56 +2.3 462,209 - EX28DRAFT_0479 0.56 -0.2 462,209 - EX28DRAFT_0479 0.56 +0.8 462,342 + EX28DRAFT_0479 0.74 +0.7 462,382 + EX28DRAFT_0479 0.80 +1.9 462,382 + EX28DRAFT_0479 0.80 +0.7 462,383 - EX28DRAFT_0479 0.80 +0.8 462,439 - EX28DRAFT_0479 0.88 +0.7 462,442 + EX28DRAFT_0479 0.88 -0.5 462,528 - +0.6 462,528 - -1.0 462,539 + +0.4 462,557 + +1.0 462,557 + +1.3 462,558 - +1.8 462,563 + +0.6 462,564 - -0.6 462,564 - -2.8 462,568 + +0.1 462,569 - -0.7 462,617 - -0.9 462,980 - EX28DRAFT_0480 0.32 +1.2 462,980 - EX28DRAFT_0480 0.32 +2.7
Or see this region's nucleotide sequence