Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0474 and EX28DRAFT_0475 are separated by 56 nucleotides EX28DRAFT_0475 and EX28DRAFT_0476 are separated by 141 nucleotides EX28DRAFT_0476 and EX28DRAFT_0477 overlap by 6 nucleotides EX28DRAFT_0477 and EX28DRAFT_0478 are separated by 82 nucleotides
EX28DRAFT_0474: EX28DRAFT_0474 - DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes, at 457,463 to 458,515
_0474
EX28DRAFT_0475: EX28DRAFT_0475 - lipid kinase YegS, at 458,572 to 459,471
_0475
EX28DRAFT_0476: EX28DRAFT_0476 - Uncharacterized conserved protein, at 459,613 to 460,113
_0476
EX28DRAFT_0477: EX28DRAFT_0477 - RNA, at 460,108 to 460,192
_0477
EX28DRAFT_0478: EX28DRAFT_0478 - Collagenase and related proteases, at 460,275 to 461,636
_0478
Position (kb) 458
459
460 Strain fitness (log2 ratio) -1
0
1
2 at 457.618 kb on + strand, within EX28DRAFT_0474 at 457.632 kb on - strand, within EX28DRAFT_0474 at 457.670 kb on - strand, within EX28DRAFT_0474 at 457.800 kb on - strand, within EX28DRAFT_0474 at 457.879 kb on + strand, within EX28DRAFT_0474 at 457.880 kb on - strand, within EX28DRAFT_0474 at 457.884 kb on - strand, within EX28DRAFT_0474 at 457.967 kb on + strand, within EX28DRAFT_0474 at 458.098 kb on - strand, within EX28DRAFT_0474 at 458.103 kb on - strand, within EX28DRAFT_0474 at 458.109 kb on + strand, within EX28DRAFT_0474 at 458.300 kb on + strand, within EX28DRAFT_0474 at 458.301 kb on - strand, within EX28DRAFT_0474 at 458.323 kb on + strand, within EX28DRAFT_0474 at 458.387 kb on - strand, within EX28DRAFT_0474 at 458.486 kb on + strand at 458.486 kb on + strand at 458.486 kb on + strand at 458.487 kb on - strand at 458.682 kb on + strand, within EX28DRAFT_0475 at 458.731 kb on - strand, within EX28DRAFT_0475 at 458.731 kb on - strand, within EX28DRAFT_0475 at 458.761 kb on - strand, within EX28DRAFT_0475 at 458.761 kb on - strand, within EX28DRAFT_0475 at 458.761 kb on - strand, within EX28DRAFT_0475 at 458.981 kb on + strand, within EX28DRAFT_0475 at 458.982 kb on - strand, within EX28DRAFT_0475 at 459.066 kb on + strand, within EX28DRAFT_0475 at 459.067 kb on - strand, within EX28DRAFT_0475 at 459.067 kb on - strand, within EX28DRAFT_0475 at 459.067 kb on - strand, within EX28DRAFT_0475 at 459.079 kb on - strand, within EX28DRAFT_0475 at 459.079 kb on - strand, within EX28DRAFT_0475 at 459.324 kb on + strand, within EX28DRAFT_0475 at 459.327 kb on - strand, within EX28DRAFT_0475 at 459.327 kb on - strand, within EX28DRAFT_0475 at 459.499 kb on + strand at 459.507 kb on + strand at 459.508 kb on - strand at 459.508 kb on - strand at 459.509 kb on + strand at 459.556 kb on + strand at 459.557 kb on - strand at 459.573 kb on + strand at 459.597 kb on + strand at 459.598 kb on - strand at 459.664 kb on + strand, within EX28DRAFT_0476 at 459.768 kb on - strand, within EX28DRAFT_0476 at 459.789 kb on + strand, within EX28DRAFT_0476 at 459.790 kb on - strand, within EX28DRAFT_0476 at 459.813 kb on - strand, within EX28DRAFT_0476 at 459.813 kb on - strand, within EX28DRAFT_0476 at 459.930 kb on - strand, within EX28DRAFT_0476 at 459.930 kb on - strand, within EX28DRAFT_0476 at 459.930 kb on - strand, within EX28DRAFT_0476 at 459.967 kb on - strand, within EX28DRAFT_0476 at 459.970 kb on + strand, within EX28DRAFT_0476 at 459.971 kb on - strand, within EX28DRAFT_0476 at 460.112 kb on - strand at 460.131 kb on + strand, within EX28DRAFT_0477 at 460.141 kb on - strand, within EX28DRAFT_0477 at 460.164 kb on + strand, within EX28DRAFT_0477 at 460.201 kb on + strand at 460.272 kb on + strand at 460.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 457,618 + EX28DRAFT_0474 0.15 -0.2 457,632 - EX28DRAFT_0474 0.16 +0.1 457,670 - EX28DRAFT_0474 0.20 +0.8 457,800 - EX28DRAFT_0474 0.32 -0.0 457,879 + EX28DRAFT_0474 0.40 +0.5 457,880 - EX28DRAFT_0474 0.40 +1.1 457,884 - EX28DRAFT_0474 0.40 +0.2 457,967 + EX28DRAFT_0474 0.48 +0.3 458,098 - EX28DRAFT_0474 0.60 -1.0 458,103 - EX28DRAFT_0474 0.61 +0.3 458,109 + EX28DRAFT_0474 0.61 +0.2 458,300 + EX28DRAFT_0474 0.79 +0.1 458,301 - EX28DRAFT_0474 0.80 -0.6 458,323 + EX28DRAFT_0474 0.82 -0.7 458,387 - EX28DRAFT_0474 0.88 +0.5 458,486 + +0.0 458,486 + -0.2 458,486 + +0.4 458,487 - -1.1 458,682 + EX28DRAFT_0475 0.12 -0.2 458,731 - EX28DRAFT_0475 0.18 +0.3 458,731 - EX28DRAFT_0475 0.18 +0.1 458,761 - EX28DRAFT_0475 0.21 +0.6 458,761 - EX28DRAFT_0475 0.21 +1.2 458,761 - EX28DRAFT_0475 0.21 -0.9 458,981 + EX28DRAFT_0475 0.45 -0.7 458,982 - EX28DRAFT_0475 0.46 -0.2 459,066 + EX28DRAFT_0475 0.55 -0.2 459,067 - EX28DRAFT_0475 0.55 +1.0 459,067 - EX28DRAFT_0475 0.55 -0.7 459,067 - EX28DRAFT_0475 0.55 +0.5 459,079 - EX28DRAFT_0475 0.56 +0.4 459,079 - EX28DRAFT_0475 0.56 -1.2 459,324 + EX28DRAFT_0475 0.84 +1.9 459,327 - EX28DRAFT_0475 0.84 +0.2 459,327 - EX28DRAFT_0475 0.84 -0.2 459,499 + -1.2 459,507 + -1.5 459,508 - +0.0 459,508 - +0.7 459,509 + +1.2 459,556 + -1.0 459,557 - -0.5 459,573 + +1.2 459,597 + +0.6 459,598 - +0.6 459,664 + EX28DRAFT_0476 0.10 +0.7 459,768 - EX28DRAFT_0476 0.31 +0.5 459,789 + EX28DRAFT_0476 0.35 +0.3 459,790 - EX28DRAFT_0476 0.35 +0.7 459,813 - EX28DRAFT_0476 0.40 +0.8 459,813 - EX28DRAFT_0476 0.40 -0.3 459,930 - EX28DRAFT_0476 0.63 +0.2 459,930 - EX28DRAFT_0476 0.63 -0.3 459,930 - EX28DRAFT_0476 0.63 +0.4 459,967 - EX28DRAFT_0476 0.71 +0.1 459,970 + EX28DRAFT_0476 0.71 +0.7 459,971 - EX28DRAFT_0476 0.71 -0.6 460,112 - -0.3 460,131 + EX28DRAFT_0477 0.27 +0.3 460,141 - EX28DRAFT_0477 0.39 -0.2 460,164 + EX28DRAFT_0477 0.66 -0.8 460,201 + -0.4 460,272 + +2.6 460,277 - +0.3
Or see this region's nucleotide sequence