Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0462

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0461 and EX28DRAFT_0462 are separated by 161 nucleotidesEX28DRAFT_0462 and EX28DRAFT_0463 are separated by 298 nucleotides EX28DRAFT_0461: EX28DRAFT_0461 - tRNA_anti-like, at 445,730 to 446,512 _0461 EX28DRAFT_0462: EX28DRAFT_0462 - hypothetical protein, at 446,674 to 446,871 _0462 EX28DRAFT_0463: EX28DRAFT_0463 - Site-specific recombinases, DNA invertase Pin homologs, at 447,170 to 447,796 _0463 Position (kb) 446 447Strain fitness (log2 ratio) -2 -1 0 1 2 3at 445.741 kb on + strandat 445.823 kb on + strand, within EX28DRAFT_0461at 445.835 kb on + strand, within EX28DRAFT_0461at 445.835 kb on + strand, within EX28DRAFT_0461at 445.836 kb on - strand, within EX28DRAFT_0461at 445.836 kb on - strand, within EX28DRAFT_0461at 445.836 kb on - strand, within EX28DRAFT_0461at 445.873 kb on - strand, within EX28DRAFT_0461at 445.965 kb on - strand, within EX28DRAFT_0461at 445.977 kb on - strand, within EX28DRAFT_0461at 445.984 kb on + strand, within EX28DRAFT_0461at 445.985 kb on - strand, within EX28DRAFT_0461at 445.985 kb on - strand, within EX28DRAFT_0461at 445.985 kb on - strand, within EX28DRAFT_0461at 446.207 kb on + strand, within EX28DRAFT_0461at 446.240 kb on + strand, within EX28DRAFT_0461at 446.284 kb on + strand, within EX28DRAFT_0461at 446.285 kb on - strand, within EX28DRAFT_0461at 446.316 kb on + strand, within EX28DRAFT_0461at 446.316 kb on + strand, within EX28DRAFT_0461at 446.317 kb on - strand, within EX28DRAFT_0461at 446.317 kb on - strand, within EX28DRAFT_0461at 446.347 kb on + strand, within EX28DRAFT_0461at 446.500 kb on + strandat 446.500 kb on + strandat 446.506 kb on + strandat 446.552 kb on + strandat 446.597 kb on - strandat 446.604 kb on - strandat 446.647 kb on - strandat 446.695 kb on - strand, within EX28DRAFT_0462at 446.699 kb on + strand, within EX28DRAFT_0462at 446.699 kb on + strand, within EX28DRAFT_0462at 446.700 kb on - strand, within EX28DRAFT_0462at 446.799 kb on - strand, within EX28DRAFT_0462at 446.822 kb on - strand, within EX28DRAFT_0462at 446.837 kb on + strand, within EX28DRAFT_0462at 446.837 kb on + strand, within EX28DRAFT_0462at 446.868 kb on - strandat 446.869 kb on + strandat 446.948 kb on + strandat 446.951 kb on + strandat 446.951 kb on + strandat 446.968 kb on - strandat 446.968 kb on - strandat 446.998 kb on + strandat 446.999 kb on - strandat 447.075 kb on + strandat 447.075 kb on + strandat 447.076 kb on - strandat 447.076 kb on - strandat 447.076 kb on - strandat 447.099 kb on + strandat 447.099 kb on + strandat 447.099 kb on + strandat 447.108 kb on + strandat 447.108 kb on + strandat 447.108 kb on + strandat 447.108 kb on + strandat 447.108 kb on + strandat 447.109 kb on - strandat 447.109 kb on - strandat 447.109 kb on - strandat 447.109 kb on - strandat 447.137 kb on + strandat 447.138 kb on - strandat 447.144 kb on - strandat 447.251 kb on - strand, within EX28DRAFT_0463at 447.270 kb on + strand, within EX28DRAFT_0463at 447.278 kb on - strand, within EX28DRAFT_0463at 447.318 kb on + strand, within EX28DRAFT_0463at 447.323 kb on - strand, within EX28DRAFT_0463at 447.379 kb on - strand, within EX28DRAFT_0463at 447.478 kb on + strand, within EX28DRAFT_0463at 447.479 kb on - strand, within EX28DRAFT_0463at 447.546 kb on - strand, within EX28DRAFT_0463at 447.546 kb on - strand, within EX28DRAFT_0463at 447.673 kb on - strand, within EX28DRAFT_0463at 447.766 kb on - strandat 447.786 kb on + strandat 447.786 kb on + strandat 447.787 kb on - strandat 447.787 kb on - strandat 447.791 kb on - strandat 447.791 kb on - strandat 447.791 kb on - strandat 447.791 kb on - strandat 447.851 kb on - strandat 447.851 kb on - strandat 447.851 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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445,741 + +1.4
445,823 + EX28DRAFT_0461 0.12 -0.3
445,835 + EX28DRAFT_0461 0.13 +0.3
445,835 + EX28DRAFT_0461 0.13 -1.6
445,836 - EX28DRAFT_0461 0.14 +0.3
445,836 - EX28DRAFT_0461 0.14 -1.6
445,836 - EX28DRAFT_0461 0.14 +0.0
445,873 - EX28DRAFT_0461 0.18 +0.4
445,965 - EX28DRAFT_0461 0.30 +0.4
445,977 - EX28DRAFT_0461 0.32 -0.6
445,984 + EX28DRAFT_0461 0.32 -0.9
445,985 - EX28DRAFT_0461 0.33 +0.8
445,985 - EX28DRAFT_0461 0.33 -0.3
445,985 - EX28DRAFT_0461 0.33 +1.1
446,207 + EX28DRAFT_0461 0.61 -0.1
446,240 + EX28DRAFT_0461 0.65 +0.2
446,284 + EX28DRAFT_0461 0.71 +1.5
446,285 - EX28DRAFT_0461 0.71 -0.7
446,316 + EX28DRAFT_0461 0.75 -1.9
446,316 + EX28DRAFT_0461 0.75 +0.6
446,317 - EX28DRAFT_0461 0.75 +0.7
446,317 - EX28DRAFT_0461 0.75 +0.2
446,347 + EX28DRAFT_0461 0.79 -0.4
446,500 + -0.0
446,500 + +0.5
446,506 + +0.1
446,552 + +0.3
446,597 - +0.0
446,604 - +0.7
446,647 - -0.3
446,695 - EX28DRAFT_0462 0.11 -0.2
446,699 + EX28DRAFT_0462 0.13 +0.2
446,699 + EX28DRAFT_0462 0.13 -0.4
446,700 - EX28DRAFT_0462 0.13 -1.2
446,799 - EX28DRAFT_0462 0.63 -1.8
446,822 - EX28DRAFT_0462 0.75 -0.4
446,837 + EX28DRAFT_0462 0.82 -1.1
446,837 + EX28DRAFT_0462 0.82 -0.5
446,868 - +3.1
446,869 + -0.4
446,948 + +0.0
446,951 + -0.4
446,951 + -0.4
446,968 - -0.1
446,968 - +1.4
446,998 + -1.7
446,999 - -0.2
447,075 + +0.3
447,075 + -0.3
447,076 - +0.3
447,076 - -0.4
447,076 - +0.1
447,099 + +0.3
447,099 + -0.3
447,099 + +0.1
447,108 + -0.3
447,108 + +1.4
447,108 + -0.1
447,108 + +0.7
447,108 + -1.6
447,109 - +1.9
447,109 - +0.1
447,109 - +0.1
447,109 - -0.4
447,137 + +0.5
447,138 - +0.4
447,144 - +0.4
447,251 - EX28DRAFT_0463 0.13 -0.6
447,270 + EX28DRAFT_0463 0.16 -1.0
447,278 - EX28DRAFT_0463 0.17 +0.1
447,318 + EX28DRAFT_0463 0.24 -1.4
447,323 - EX28DRAFT_0463 0.24 -0.4
447,379 - EX28DRAFT_0463 0.33 -1.5
447,478 + EX28DRAFT_0463 0.49 +1.3
447,479 - EX28DRAFT_0463 0.49 -0.7
447,546 - EX28DRAFT_0463 0.60 +1.2
447,546 - EX28DRAFT_0463 0.60 -0.9
447,673 - EX28DRAFT_0463 0.80 +0.1
447,766 - +0.1
447,786 + +0.1
447,786 + -1.8
447,787 - +0.3
447,787 - +0.0
447,791 - -0.4
447,791 - +0.7
447,791 - -0.3
447,791 - +0.8
447,851 - +0.7
447,851 - +1.7
447,851 - -0.0

Or see this region's nucleotide sequence