Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0371

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0369 and EX28DRAFT_0370 are separated by 209 nucleotidesEX28DRAFT_0370 and EX28DRAFT_0371 are separated by 138 nucleotidesEX28DRAFT_0371 and EX28DRAFT_0372 are separated by 35 nucleotidesEX28DRAFT_0372 and EX28DRAFT_0373 are separated by 72 nucleotides EX28DRAFT_0369: EX28DRAFT_0369 - Serine protease inhibitor ecotin, at 341,743 to 342,246 _0369 EX28DRAFT_0370: EX28DRAFT_0370 - Protein of unknown function (DUF2534), at 342,456 to 342,716 _0370 EX28DRAFT_0371: EX28DRAFT_0371 - Arabinose efflux permease, at 342,855 to 344,042 _0371 EX28DRAFT_0372: EX28DRAFT_0372 - tRNA, at 344,078 to 344,154 _0372 EX28DRAFT_0373: EX28DRAFT_0373 - Predicted hydrolase of alkaline phosphatase superfamily, at 344,227 to 345,987 _0373 Position (kb) 342 343 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 341.874 kb on - strand, within EX28DRAFT_0369at 341.958 kb on - strand, within EX28DRAFT_0369at 342.063 kb on + strand, within EX28DRAFT_0369at 342.258 kb on + strandat 342.259 kb on - strandat 342.316 kb on - strandat 342.421 kb on + strandat 342.421 kb on + strandat 342.421 kb on + strandat 342.422 kb on - strandat 342.423 kb on + strandat 342.425 kb on + strandat 342.425 kb on + strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.431 kb on + strandat 342.432 kb on - strandat 342.518 kb on - strand, within EX28DRAFT_0370at 342.521 kb on + strand, within EX28DRAFT_0370at 342.521 kb on + strand, within EX28DRAFT_0370at 342.576 kb on + strand, within EX28DRAFT_0370at 342.576 kb on + strand, within EX28DRAFT_0370at 342.577 kb on - strand, within EX28DRAFT_0370at 342.577 kb on - strand, within EX28DRAFT_0370at 342.581 kb on + strand, within EX28DRAFT_0370at 342.581 kb on + strand, within EX28DRAFT_0370at 342.581 kb on + strand, within EX28DRAFT_0370at 342.612 kb on + strand, within EX28DRAFT_0370at 342.612 kb on + strand, within EX28DRAFT_0370at 342.612 kb on + strand, within EX28DRAFT_0370at 342.612 kb on + strand, within EX28DRAFT_0370at 342.613 kb on - strand, within EX28DRAFT_0370at 342.613 kb on - strand, within EX28DRAFT_0370at 342.613 kb on - strand, within EX28DRAFT_0370at 342.613 kb on - strand, within EX28DRAFT_0370at 342.613 kb on - strand, within EX28DRAFT_0370at 342.643 kb on - strand, within EX28DRAFT_0370at 342.715 kb on - strandat 342.731 kb on + strandat 342.735 kb on + strandat 342.736 kb on - strandat 342.736 kb on - strandat 342.809 kb on + strandat 342.920 kb on + strandat 342.921 kb on - strandat 342.933 kb on - strandat 342.947 kb on + strandat 342.947 kb on + strandat 342.971 kb on + strandat 343.047 kb on - strand, within EX28DRAFT_0371at 343.050 kb on - strand, within EX28DRAFT_0371at 343.092 kb on - strand, within EX28DRAFT_0371at 343.113 kb on + strand, within EX28DRAFT_0371at 343.325 kb on - strand, within EX28DRAFT_0371at 343.334 kb on - strand, within EX28DRAFT_0371at 343.339 kb on + strand, within EX28DRAFT_0371at 343.419 kb on + strand, within EX28DRAFT_0371at 343.419 kb on + strand, within EX28DRAFT_0371at 343.463 kb on + strand, within EX28DRAFT_0371at 343.464 kb on - strand, within EX28DRAFT_0371at 343.464 kb on - strand, within EX28DRAFT_0371at 343.467 kb on - strand, within EX28DRAFT_0371at 343.467 kb on - strand, within EX28DRAFT_0371at 343.611 kb on - strand, within EX28DRAFT_0371at 343.644 kb on + strand, within EX28DRAFT_0371at 343.645 kb on - strand, within EX28DRAFT_0371at 343.645 kb on - strand, within EX28DRAFT_0371at 343.780 kb on + strand, within EX28DRAFT_0371at 343.801 kb on + strand, within EX28DRAFT_0371at 343.801 kb on + strand, within EX28DRAFT_0371at 343.801 kb on + strand, within EX28DRAFT_0371at 343.802 kb on - strand, within EX28DRAFT_0371at 343.802 kb on - strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.805 kb on + strand, within EX28DRAFT_0371at 343.806 kb on - strand, within EX28DRAFT_0371at 343.806 kb on - strand, within EX28DRAFT_0371at 343.912 kb on + strand, within EX28DRAFT_0371at 343.967 kb on + strandat 343.967 kb on + strandat 344.010 kb on + strandat 344.010 kb on + strandat 344.010 kb on + strandat 344.011 kb on - strandat 344.011 kb on - strandat 344.319 kb on + strandat 344.320 kb on - strandat 344.320 kb on - strandat 344.320 kb on - strandat 344.320 kb on - strandat 344.321 kb on + strandat 344.321 kb on + strandat 344.322 kb on - strandat 344.385 kb on + strandat 344.385 kb on + strandat 344.388 kb on + strandat 344.389 kb on - strandat 344.515 kb on - strand, within EX28DRAFT_0373at 344.515 kb on - strand, within EX28DRAFT_0373at 344.529 kb on + strand, within EX28DRAFT_0373at 344.604 kb on + strand, within EX28DRAFT_0373at 344.604 kb on + strand, within EX28DRAFT_0373at 344.715 kb on + strand, within EX28DRAFT_0373at 344.763 kb on + strand, within EX28DRAFT_0373at 344.764 kb on - strand, within EX28DRAFT_0373at 344.965 kb on + strand, within EX28DRAFT_0373at 344.973 kb on - strand, within EX28DRAFT_0373at 345.026 kb on - strand, within EX28DRAFT_0373at 345.026 kb on - strand, within EX28DRAFT_0373at 345.036 kb on + strand, within EX28DRAFT_0373at 345.036 kb on + strand, within EX28DRAFT_0373at 345.038 kb on + strand, within EX28DRAFT_0373at 345.039 kb on - strand, within EX28DRAFT_0373

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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341,874 - EX28DRAFT_0369 0.26 -0.3
341,958 - EX28DRAFT_0369 0.43 -0.3
342,063 + EX28DRAFT_0369 0.63 +0.2
342,258 + -0.2
342,259 - +0.3
342,316 - -0.9
342,421 + +0.5
342,421 + +0.0
342,421 + +0.5
342,422 - +0.4
342,423 + -0.5
342,425 + -0.8
342,425 + -0.4
342,426 - -0.4
342,426 - -0.2
342,426 - +0.9
342,426 - +0.6
342,431 + +0.4
342,432 - +0.2
342,518 - EX28DRAFT_0370 0.24 -0.7
342,521 + EX28DRAFT_0370 0.25 +0.2
342,521 + EX28DRAFT_0370 0.25 -0.8
342,576 + EX28DRAFT_0370 0.46 +0.7
342,576 + EX28DRAFT_0370 0.46 -0.1
342,577 - EX28DRAFT_0370 0.46 -0.0
342,577 - EX28DRAFT_0370 0.46 +0.5
342,581 + EX28DRAFT_0370 0.48 +0.1
342,581 + EX28DRAFT_0370 0.48 -0.2
342,581 + EX28DRAFT_0370 0.48 +0.7
342,612 + EX28DRAFT_0370 0.60 -0.3
342,612 + EX28DRAFT_0370 0.60 +0.4
342,612 + EX28DRAFT_0370 0.60 +1.3
342,612 + EX28DRAFT_0370 0.60 -0.4
342,613 - EX28DRAFT_0370 0.60 -0.7
342,613 - EX28DRAFT_0370 0.60 -1.4
342,613 - EX28DRAFT_0370 0.60 -0.7
342,613 - EX28DRAFT_0370 0.60 -0.6
342,613 - EX28DRAFT_0370 0.60 -2.8
342,643 - EX28DRAFT_0370 0.72 -2.4
342,715 - -3.0
342,731 + +0.4
342,735 + -1.3
342,736 - -0.1
342,736 - -0.7
342,809 + -1.3
342,920 + +1.1
342,921 - +0.2
342,933 - +2.3
342,947 + +0.6
342,947 + +0.7
342,971 + +0.0
343,047 - EX28DRAFT_0371 0.16 -0.3
343,050 - EX28DRAFT_0371 0.16 -0.6
343,092 - EX28DRAFT_0371 0.20 -0.4
343,113 + EX28DRAFT_0371 0.22 +0.5
343,325 - EX28DRAFT_0371 0.40 -1.0
343,334 - EX28DRAFT_0371 0.40 -0.2
343,339 + EX28DRAFT_0371 0.41 -1.7
343,419 + EX28DRAFT_0371 0.47 +2.1
343,419 + EX28DRAFT_0371 0.47 -0.4
343,463 + EX28DRAFT_0371 0.51 -0.4
343,464 - EX28DRAFT_0371 0.51 -1.6
343,464 - EX28DRAFT_0371 0.51 +1.0
343,467 - EX28DRAFT_0371 0.52 +0.6
343,467 - EX28DRAFT_0371 0.52 -0.1
343,611 - EX28DRAFT_0371 0.64 -0.6
343,644 + EX28DRAFT_0371 0.66 +0.9
343,645 - EX28DRAFT_0371 0.66 -0.0
343,645 - EX28DRAFT_0371 0.66 +0.6
343,780 + EX28DRAFT_0371 0.78 -0.4
343,801 + EX28DRAFT_0371 0.80 -1.0
343,801 + EX28DRAFT_0371 0.80 -1.0
343,801 + EX28DRAFT_0371 0.80 -0.3
343,802 - EX28DRAFT_0371 0.80 -0.2
343,802 - EX28DRAFT_0371 0.80 +1.3
343,805 + EX28DRAFT_0371 0.80 -0.3
343,805 + EX28DRAFT_0371 0.80 -1.0
343,805 + EX28DRAFT_0371 0.80 -0.9
343,805 + EX28DRAFT_0371 0.80 +0.4
343,805 + EX28DRAFT_0371 0.80 +0.4
343,805 + EX28DRAFT_0371 0.80 -1.0
343,805 + EX28DRAFT_0371 0.80 -1.7
343,806 - EX28DRAFT_0371 0.80 +1.0
343,806 - EX28DRAFT_0371 0.80 -0.9
343,912 + EX28DRAFT_0371 0.89 -0.1
343,967 + -0.1
343,967 + +3.1
344,010 + -0.1
344,010 + +0.6
344,010 + -1.8
344,011 - +0.0
344,011 - -0.7
344,319 + +0.4
344,320 - +0.6
344,320 - +0.4
344,320 - +2.0
344,320 - -0.4
344,321 + +0.5
344,321 + +0.7
344,322 - -0.2
344,385 + +1.4
344,385 + -0.7
344,388 + +0.0
344,389 - -0.6
344,515 - EX28DRAFT_0373 0.16 +1.2
344,515 - EX28DRAFT_0373 0.16 -1.2
344,529 + EX28DRAFT_0373 0.17 -0.1
344,604 + EX28DRAFT_0373 0.21 -0.6
344,604 + EX28DRAFT_0373 0.21 -0.3
344,715 + EX28DRAFT_0373 0.28 +1.0
344,763 + EX28DRAFT_0373 0.30 +0.4
344,764 - EX28DRAFT_0373 0.30 +0.4
344,965 + EX28DRAFT_0373 0.42 +0.7
344,973 - EX28DRAFT_0373 0.42 +0.3
345,026 - EX28DRAFT_0373 0.45 +0.0
345,026 - EX28DRAFT_0373 0.45 -0.8
345,036 + EX28DRAFT_0373 0.46 +0.6
345,036 + EX28DRAFT_0373 0.46 +0.3
345,038 + EX28DRAFT_0373 0.46 -0.3
345,039 - EX28DRAFT_0373 0.46 +1.6

Or see this region's nucleotide sequence