Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0333 and EX28DRAFT_0334 are separated by 6 nucleotides EX28DRAFT_0334 and EX28DRAFT_0335 are separated by 92 nucleotides
EX28DRAFT_0333: EX28DRAFT_0333 - proton-translocating NADH-quinone oxidoreductase, chain M, at 294,565 to 296,094
_0333
EX28DRAFT_0334: EX28DRAFT_0334 - proton-translocating NADH-quinone oxidoreductase, chain N, at 296,101 to 297,558
_0334
EX28DRAFT_0335: EX28DRAFT_0335 - Chemotaxis signal transduction protein, at 297,651 to 298,655
_0335
Position (kb) 296
297
298 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 295.551 kb on + strand, within EX28DRAFT_0333 at 295.552 kb on - strand, within EX28DRAFT_0333 at 295.556 kb on - strand, within EX28DRAFT_0333 at 295.681 kb on - strand, within EX28DRAFT_0333 at 295.867 kb on + strand, within EX28DRAFT_0333 at 295.868 kb on - strand, within EX28DRAFT_0333 at 296.079 kb on + strand at 296.092 kb on + strand at 296.108 kb on + strand at 296.576 kb on - strand, within EX28DRAFT_0334 at 296.576 kb on - strand, within EX28DRAFT_0334 at 296.632 kb on + strand, within EX28DRAFT_0334 at 297.504 kb on + strand at 297.508 kb on + strand at 297.652 kb on + strand at 297.652 kb on + strand at 297.653 kb on - strand at 298.007 kb on + strand, within EX28DRAFT_0335 at 298.007 kb on + strand, within EX28DRAFT_0335 at 298.171 kb on + strand, within EX28DRAFT_0335 at 298.172 kb on - strand, within EX28DRAFT_0335 at 298.172 kb on - strand, within EX28DRAFT_0335 at 298.252 kb on + strand, within EX28DRAFT_0335 at 298.252 kb on + strand, within EX28DRAFT_0335 at 298.253 kb on - strand, within EX28DRAFT_0335 at 298.395 kb on - strand, within EX28DRAFT_0335 at 298.523 kb on + strand, within EX28DRAFT_0335
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 295,551 + EX28DRAFT_0333 0.64 -4.9 295,552 - EX28DRAFT_0333 0.65 -4.3 295,556 - EX28DRAFT_0333 0.65 -4.2 295,681 - EX28DRAFT_0333 0.73 -3.4 295,867 + EX28DRAFT_0333 0.85 -4.0 295,868 - EX28DRAFT_0333 0.85 -3.6 296,079 + -2.2 296,092 + -2.3 296,108 + -3.0 296,576 - EX28DRAFT_0334 0.33 -3.6 296,576 - EX28DRAFT_0334 0.33 -3.8 296,632 + EX28DRAFT_0334 0.36 -4.4 297,504 + -4.8 297,508 + -3.8 297,652 + -0.3 297,652 + -1.2 297,653 - +0.5 298,007 + EX28DRAFT_0335 0.35 -0.8 298,007 + EX28DRAFT_0335 0.35 +0.3 298,171 + EX28DRAFT_0335 0.52 +1.4 298,172 - EX28DRAFT_0335 0.52 -0.0 298,172 - EX28DRAFT_0335 0.52 -0.1 298,252 + EX28DRAFT_0335 0.60 +2.3 298,252 + EX28DRAFT_0335 0.60 -0.1 298,253 - EX28DRAFT_0335 0.60 +0.7 298,395 - EX28DRAFT_0335 0.74 -0.1 298,523 + EX28DRAFT_0335 0.87 -0.8
Or see this region's nucleotide sequence