Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0328 and EX28DRAFT_0329 are separated by 13 nucleotides EX28DRAFT_0329 and EX28DRAFT_0330 are separated by 10 nucleotides EX28DRAFT_0330 and EX28DRAFT_0331 overlap by 4 nucleotides EX28DRAFT_0331 and EX28DRAFT_0332 overlap by 4 nucleotides
EX28DRAFT_0328: EX28DRAFT_0328 - NADH:ubiquinone oxidoreductase subunit 1 (chain H), at 290,253 to 291,230
_0328
EX28DRAFT_0329: EX28DRAFT_0329 - NADH-quinone oxidoreductase, chain I, at 291,244 to 291,786
_0329
EX28DRAFT_0330: EX28DRAFT_0330 - NADH:ubiquinone oxidoreductase subunit 6 (chain J), at 291,797 to 292,351
_0330
EX28DRAFT_0331: EX28DRAFT_0331 - NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K), at 292,348 to 292,650
_0331
EX28DRAFT_0332: EX28DRAFT_0332 - proton-translocating NADH-quinone oxidoreductase, chain L, at 292,647 to 294,488
_0332
Position (kb) 291
292
293 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 290.843 kb on + strand, within EX28DRAFT_0328 at 291.142 kb on + strand at 291.237 kb on - strand at 291.238 kb on + strand at 291.251 kb on + strand at 291.285 kb on - strand at 291.358 kb on + strand, within EX28DRAFT_0329 at 291.358 kb on + strand, within EX28DRAFT_0329 at 291.359 kb on - strand, within EX28DRAFT_0329 at 291.465 kb on + strand, within EX28DRAFT_0329 at 291.465 kb on + strand, within EX28DRAFT_0329 at 291.616 kb on + strand, within EX28DRAFT_0329 at 291.616 kb on + strand, within EX28DRAFT_0329 at 291.617 kb on - strand, within EX28DRAFT_0329 at 291.638 kb on - strand, within EX28DRAFT_0329 at 291.685 kb on + strand, within EX28DRAFT_0329 at 291.754 kb on - strand at 291.812 kb on + strand at 291.812 kb on + strand at 291.888 kb on - strand, within EX28DRAFT_0330 at 291.891 kb on + strand, within EX28DRAFT_0330 at 292.186 kb on + strand, within EX28DRAFT_0330 at 292.531 kb on + strand, within EX28DRAFT_0331 at 292.532 kb on - strand, within EX28DRAFT_0331 at 292.532 kb on - strand, within EX28DRAFT_0331 at 292.962 kb on + strand, within EX28DRAFT_0332 at 292.963 kb on - strand, within EX28DRAFT_0332 at 292.965 kb on - strand, within EX28DRAFT_0332 at 293.064 kb on + strand, within EX28DRAFT_0332 at 293.064 kb on + strand, within EX28DRAFT_0332 at 293.115 kb on + strand, within EX28DRAFT_0332 at 293.115 kb on + strand, within EX28DRAFT_0332 at 293.118 kb on + strand, within EX28DRAFT_0332 at 293.300 kb on + strand, within EX28DRAFT_0332
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 290,843 + EX28DRAFT_0328 0.60 -3.8 291,142 + -5.5 291,237 - -6.1 291,238 + -2.3 291,251 + -1.5 291,285 - -3.0 291,358 + EX28DRAFT_0329 0.21 -5.5 291,358 + EX28DRAFT_0329 0.21 -1.3 291,359 - EX28DRAFT_0329 0.21 -4.9 291,465 + EX28DRAFT_0329 0.41 -4.2 291,465 + EX28DRAFT_0329 0.41 -3.0 291,616 + EX28DRAFT_0329 0.69 -2.8 291,616 + EX28DRAFT_0329 0.69 -4.7 291,617 - EX28DRAFT_0329 0.69 -2.4 291,638 - EX28DRAFT_0329 0.73 -3.5 291,685 + EX28DRAFT_0329 0.81 -5.2 291,754 - -3.3 291,812 + -3.5 291,812 + -5.1 291,888 - EX28DRAFT_0330 0.16 -3.3 291,891 + EX28DRAFT_0330 0.17 -3.4 292,186 + EX28DRAFT_0330 0.70 -5.2 292,531 + EX28DRAFT_0331 0.60 -3.9 292,532 - EX28DRAFT_0331 0.61 -3.6 292,532 - EX28DRAFT_0331 0.61 -4.7 292,962 + EX28DRAFT_0332 0.17 -3.8 292,963 - EX28DRAFT_0332 0.17 -2.3 292,965 - EX28DRAFT_0332 0.17 -3.4 293,064 + EX28DRAFT_0332 0.23 -3.3 293,064 + EX28DRAFT_0332 0.23 -4.3 293,115 + EX28DRAFT_0332 0.25 -6.7 293,115 + EX28DRAFT_0332 0.25 -4.8 293,118 + EX28DRAFT_0332 0.26 -4.9 293,300 + EX28DRAFT_0332 0.35 -2.4
Or see this region's nucleotide sequence