Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0305

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0303 and EX28DRAFT_0304 are separated by 56 nucleotidesEX28DRAFT_0304 and EX28DRAFT_0305 are separated by 55 nucleotidesEX28DRAFT_0305 and EX28DRAFT_0306 are separated by 3 nucleotides EX28DRAFT_0303: EX28DRAFT_0303 - Glutathione S-transferase, at 263,566 to 264,210 _0303 EX28DRAFT_0304: EX28DRAFT_0304 - phosphoesterase, MJ0936 family, at 264,267 to 264,818 _0304 EX28DRAFT_0305: EX28DRAFT_0305 - Isopentenyldiphosphate isomerase, at 264,874 to 265,428 _0305 EX28DRAFT_0306: EX28DRAFT_0306 - transcriptional regulator, LacI family, at 265,432 to 266,451 _0306 Position (kb) 264 265 266Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 264.139 kb on + strand, within EX28DRAFT_0303at 264.178 kb on + strandat 264.178 kb on + strandat 264.178 kb on + strandat 264.178 kb on + strandat 264.178 kb on + strandat 264.179 kb on - strandat 264.211 kb on + strandat 264.212 kb on - strandat 264.231 kb on - strandat 264.363 kb on - strand, within EX28DRAFT_0304at 264.644 kb on + strand, within EX28DRAFT_0304at 264.644 kb on + strand, within EX28DRAFT_0304at 264.645 kb on - strand, within EX28DRAFT_0304at 264.645 kb on - strand, within EX28DRAFT_0304at 264.709 kb on + strand, within EX28DRAFT_0304at 264.709 kb on + strand, within EX28DRAFT_0304at 264.709 kb on + strand, within EX28DRAFT_0304at 264.710 kb on - strand, within EX28DRAFT_0304at 264.710 kb on - strand, within EX28DRAFT_0304at 264.713 kb on + strand, within EX28DRAFT_0304at 264.713 kb on + strand, within EX28DRAFT_0304at 264.714 kb on - strand, within EX28DRAFT_0304at 264.735 kb on + strand, within EX28DRAFT_0304at 264.736 kb on - strand, within EX28DRAFT_0304at 264.755 kb on + strand, within EX28DRAFT_0304at 264.755 kb on + strand, within EX28DRAFT_0304at 264.756 kb on - strand, within EX28DRAFT_0304at 264.777 kb on - strandat 264.817 kb on - strandat 264.821 kb on + strandat 264.821 kb on + strandat 264.856 kb on - strandat 264.901 kb on - strandat 264.998 kb on - strand, within EX28DRAFT_0305at 264.998 kb on - strand, within EX28DRAFT_0305at 264.998 kb on - strand, within EX28DRAFT_0305at 265.018 kb on - strand, within EX28DRAFT_0305at 265.154 kb on + strand, within EX28DRAFT_0305at 265.236 kb on + strand, within EX28DRAFT_0305at 265.237 kb on - strand, within EX28DRAFT_0305at 265.800 kb on + strand, within EX28DRAFT_0306at 265.800 kb on + strand, within EX28DRAFT_0306at 265.800 kb on + strand, within EX28DRAFT_0306at 265.800 kb on + strand, within EX28DRAFT_0306at 265.801 kb on - strand, within EX28DRAFT_0306at 265.801 kb on - strand, within EX28DRAFT_0306at 265.801 kb on - strand, within EX28DRAFT_0306at 265.801 kb on - strand, within EX28DRAFT_0306at 265.885 kb on - strand, within EX28DRAFT_0306at 265.925 kb on + strand, within EX28DRAFT_0306at 265.925 kb on + strand, within EX28DRAFT_0306at 265.926 kb on - strand, within EX28DRAFT_0306at 265.959 kb on + strand, within EX28DRAFT_0306at 265.960 kb on - strand, within EX28DRAFT_0306at 265.960 kb on - strand, within EX28DRAFT_0306at 266.040 kb on + strand, within EX28DRAFT_0306at 266.040 kb on + strand, within EX28DRAFT_0306at 266.041 kb on - strand, within EX28DRAFT_0306at 266.074 kb on - strand, within EX28DRAFT_0306at 266.164 kb on + strand, within EX28DRAFT_0306at 266.218 kb on - strand, within EX28DRAFT_0306at 266.218 kb on - strand, within EX28DRAFT_0306at 266.283 kb on + strand, within EX28DRAFT_0306at 266.283 kb on + strand, within EX28DRAFT_0306at 266.284 kb on - strand, within EX28DRAFT_0306at 266.285 kb on + strand, within EX28DRAFT_0306at 266.285 kb on + strand, within EX28DRAFT_0306at 266.285 kb on + strand, within EX28DRAFT_0306at 266.324 kb on - strand, within EX28DRAFT_0306at 266.324 kb on - strand, within EX28DRAFT_0306

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
264,139 + EX28DRAFT_0303 0.89 +1.3
264,178 + +0.3
264,178 + +0.3
264,178 + +0.8
264,178 + +0.4
264,178 + +0.3
264,179 - +0.9
264,211 + -0.3
264,212 - -0.1
264,231 - -0.0
264,363 - EX28DRAFT_0304 0.17 -0.1
264,644 + EX28DRAFT_0304 0.68 +0.1
264,644 + EX28DRAFT_0304 0.68 +0.5
264,645 - EX28DRAFT_0304 0.68 -0.6
264,645 - EX28DRAFT_0304 0.68 -3.8
264,709 + EX28DRAFT_0304 0.80 +0.2
264,709 + EX28DRAFT_0304 0.80 +0.1
264,709 + EX28DRAFT_0304 0.80 -1.0
264,710 - EX28DRAFT_0304 0.80 +0.3
264,710 - EX28DRAFT_0304 0.80 +1.1
264,713 + EX28DRAFT_0304 0.81 -0.1
264,713 + EX28DRAFT_0304 0.81 +0.2
264,714 - EX28DRAFT_0304 0.81 +0.5
264,735 + EX28DRAFT_0304 0.85 +0.5
264,736 - EX28DRAFT_0304 0.85 +0.1
264,755 + EX28DRAFT_0304 0.88 +0.4
264,755 + EX28DRAFT_0304 0.88 -1.1
264,756 - EX28DRAFT_0304 0.89 +0.5
264,777 - -0.2
264,817 - +1.2
264,821 + -0.5
264,821 + -0.3
264,856 - -0.8
264,901 - -1.1
264,998 - EX28DRAFT_0305 0.22 -1.0
264,998 - EX28DRAFT_0305 0.22 -1.6
264,998 - EX28DRAFT_0305 0.22 -0.5
265,018 - EX28DRAFT_0305 0.26 -1.7
265,154 + EX28DRAFT_0305 0.50 -0.5
265,236 + EX28DRAFT_0305 0.65 -0.3
265,237 - EX28DRAFT_0305 0.65 -1.8
265,800 + EX28DRAFT_0306 0.36 -1.5
265,800 + EX28DRAFT_0306 0.36 -2.0
265,800 + EX28DRAFT_0306 0.36 -2.4
265,800 + EX28DRAFT_0306 0.36 -0.8
265,801 - EX28DRAFT_0306 0.36 -1.1
265,801 - EX28DRAFT_0306 0.36 -0.5
265,801 - EX28DRAFT_0306 0.36 -2.8
265,801 - EX28DRAFT_0306 0.36 -1.2
265,885 - EX28DRAFT_0306 0.44 -0.2
265,925 + EX28DRAFT_0306 0.48 -1.2
265,925 + EX28DRAFT_0306 0.48 -1.5
265,926 - EX28DRAFT_0306 0.48 -0.5
265,959 + EX28DRAFT_0306 0.52 -0.8
265,960 - EX28DRAFT_0306 0.52 -1.1
265,960 - EX28DRAFT_0306 0.52 +0.5
266,040 + EX28DRAFT_0306 0.60 -1.1
266,040 + EX28DRAFT_0306 0.60 +0.2
266,041 - EX28DRAFT_0306 0.60 -1.3
266,074 - EX28DRAFT_0306 0.63 -1.0
266,164 + EX28DRAFT_0306 0.72 -0.8
266,218 - EX28DRAFT_0306 0.77 -1.9
266,218 - EX28DRAFT_0306 0.77 -1.1
266,283 + EX28DRAFT_0306 0.83 -1.2
266,283 + EX28DRAFT_0306 0.83 -1.7
266,284 - EX28DRAFT_0306 0.84 +0.2
266,285 + EX28DRAFT_0306 0.84 -0.9
266,285 + EX28DRAFT_0306 0.84 -1.8
266,285 + EX28DRAFT_0306 0.84 -1.6
266,324 - EX28DRAFT_0306 0.87 -1.6
266,324 - EX28DRAFT_0306 0.87 -1.6

Or see this region's nucleotide sequence