Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0285 and EX28DRAFT_0286 overlap by 1 nucleotides EX28DRAFT_0286 and EX28DRAFT_0287 are separated by 28 nucleotides EX28DRAFT_0287 and EX28DRAFT_0288 are separated by 154 nucleotides
EX28DRAFT_0285: EX28DRAFT_0285 - Aspartate-semialdehyde dehydrogenase, at 247,967 to 248,980
_0285
EX28DRAFT_0286: EX28DRAFT_0286 - tRNA pseudouridine(38-40) synthase, at 248,980 to 249,792
_0286
EX28DRAFT_0287: EX28DRAFT_0287 - Uncharacterized membrane-associated protein, at 249,821 to 250,480
_0287
EX28DRAFT_0288: EX28DRAFT_0288 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit, at 250,635 to 251,540
_0288
Position (kb) 248
249
250 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 247.995 kb on + strand at 248.065 kb on + strand at 248.069 kb on + strand, within EX28DRAFT_0285 at 248.069 kb on + strand, within EX28DRAFT_0285 at 248.262 kb on + strand, within EX28DRAFT_0285 at 248.611 kb on + strand, within EX28DRAFT_0285 at 248.975 kb on + strand at 249.264 kb on - strand, within EX28DRAFT_0286 at 249.521 kb on + strand, within EX28DRAFT_0286 at 249.545 kb on - strand, within EX28DRAFT_0286 at 249.777 kb on - strand at 249.806 kb on + strand at 249.828 kb on + strand at 249.828 kb on + strand at 249.828 kb on + strand at 249.860 kb on - strand at 250.039 kb on + strand, within EX28DRAFT_0287 at 250.040 kb on - strand, within EX28DRAFT_0287 at 250.088 kb on + strand, within EX28DRAFT_0287 at 250.089 kb on - strand, within EX28DRAFT_0287 at 250.091 kb on - strand, within EX28DRAFT_0287 at 250.157 kb on + strand, within EX28DRAFT_0287 at 250.162 kb on - strand, within EX28DRAFT_0287 at 250.228 kb on + strand, within EX28DRAFT_0287 at 250.271 kb on - strand, within EX28DRAFT_0287 at 250.295 kb on + strand, within EX28DRAFT_0287 at 250.295 kb on + strand, within EX28DRAFT_0287
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 247,995 + +0.0 248,065 + -1.1 248,069 + EX28DRAFT_0285 0.10 +0.5 248,069 + EX28DRAFT_0285 0.10 -2.0 248,262 + EX28DRAFT_0285 0.29 -0.5 248,611 + EX28DRAFT_0285 0.64 -1.7 248,975 + -0.4 249,264 - EX28DRAFT_0286 0.35 -3.8 249,521 + EX28DRAFT_0286 0.67 -3.1 249,545 - EX28DRAFT_0286 0.69 -3.0 249,777 - -0.0 249,806 + +0.1 249,828 + -0.6 249,828 + -0.5 249,828 + +0.9 249,860 - +0.5 250,039 + EX28DRAFT_0287 0.33 +0.1 250,040 - EX28DRAFT_0287 0.33 -0.4 250,088 + EX28DRAFT_0287 0.40 -0.6 250,089 - EX28DRAFT_0287 0.41 -0.4 250,091 - EX28DRAFT_0287 0.41 +0.2 250,157 + EX28DRAFT_0287 0.51 -0.3 250,162 - EX28DRAFT_0287 0.52 +0.3 250,228 + EX28DRAFT_0287 0.62 +0.8 250,271 - EX28DRAFT_0287 0.68 -0.1 250,295 + EX28DRAFT_0287 0.72 +3.0 250,295 + EX28DRAFT_0287 0.72 +0.6
Or see this region's nucleotide sequence