Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0226 and EX28DRAFT_0227 are separated by 22 nucleotides EX28DRAFT_0227 and EX28DRAFT_0228 are separated by 217 nucleotides EX28DRAFT_0228 and EX28DRAFT_0229 are separated by 41 nucleotides EX28DRAFT_0229 and EX28DRAFT_0230 are separated by 249 nucleotides
EX28DRAFT_0226: EX28DRAFT_0226 - Putative transcription regulator (DUF1323), at 178,096 to 178,467
_0226
EX28DRAFT_0227: EX28DRAFT_0227 - Putative transcription regulator (DUF1323), at 178,490 to 178,852
_0227
EX28DRAFT_0228: EX28DRAFT_0228 - tRNA, at 179,070 to 179,145
_0228
EX28DRAFT_0229: EX28DRAFT_0229 - tRNA, at 179,187 to 179,262
_0229
EX28DRAFT_0230: EX28DRAFT_0230 - FOG: EAL domain, at 179,512 to 181,668
_0230
Position (kb) 179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 178.097 kb on + strand at 178.142 kb on - strand, within EX28DRAFT_0226 at 178.160 kb on - strand, within EX28DRAFT_0226 at 178.247 kb on + strand, within EX28DRAFT_0226 at 178.247 kb on + strand, within EX28DRAFT_0226 at 178.312 kb on - strand, within EX28DRAFT_0226 at 178.314 kb on + strand, within EX28DRAFT_0226 at 178.314 kb on + strand, within EX28DRAFT_0226 at 178.314 kb on + strand, within EX28DRAFT_0226 at 178.315 kb on - strand, within EX28DRAFT_0226 at 178.338 kb on + strand, within EX28DRAFT_0226 at 178.471 kb on - strand at 178.489 kb on - strand at 178.624 kb on + strand, within EX28DRAFT_0227 at 178.624 kb on + strand, within EX28DRAFT_0227 at 178.624 kb on + strand, within EX28DRAFT_0227 at 178.624 kb on + strand, within EX28DRAFT_0227 at 178.625 kb on - strand, within EX28DRAFT_0227 at 178.712 kb on + strand, within EX28DRAFT_0227 at 178.783 kb on + strand, within EX28DRAFT_0227 at 178.783 kb on + strand, within EX28DRAFT_0227 at 178.784 kb on - strand, within EX28DRAFT_0227 at 178.804 kb on - strand, within EX28DRAFT_0227 at 178.896 kb on - strand at 178.896 kb on - strand at 178.898 kb on - strand at 179.035 kb on + strand at 179.064 kb on + strand at 179.064 kb on + strand at 179.077 kb on + strand at 179.077 kb on + strand at 179.077 kb on + strand at 179.135 kb on + strand, within EX28DRAFT_0228 at 179.179 kb on + strand at 179.179 kb on + strand at 179.179 kb on + strand at 179.180 kb on - strand at 179.180 kb on - strand at 179.269 kb on + strand at 179.347 kb on + strand at 179.348 kb on - strand at 179.348 kb on - strand at 179.482 kb on - strand at 179.512 kb on - strand at 179.597 kb on - strand at 179.601 kb on - strand at 179.622 kb on - strand at 179.668 kb on - strand at 179.736 kb on - strand, within EX28DRAFT_0230 at 179.736 kb on - strand, within EX28DRAFT_0230 at 179.838 kb on - strand, within EX28DRAFT_0230 at 179.875 kb on - strand, within EX28DRAFT_0230 at 179.877 kb on + strand, within EX28DRAFT_0230 at 179.959 kb on + strand, within EX28DRAFT_0230 at 179.975 kb on + strand, within EX28DRAFT_0230 at 180.019 kb on + strand, within EX28DRAFT_0230 at 180.060 kb on - strand, within EX28DRAFT_0230 at 180.115 kb on - strand, within EX28DRAFT_0230 at 180.138 kb on - strand, within EX28DRAFT_0230
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 178,097 + +0.1 178,142 - EX28DRAFT_0226 0.12 +0.8 178,160 - EX28DRAFT_0226 0.17 -0.9 178,247 + EX28DRAFT_0226 0.41 +0.3 178,247 + EX28DRAFT_0226 0.41 +0.2 178,312 - EX28DRAFT_0226 0.58 +0.2 178,314 + EX28DRAFT_0226 0.59 -0.7 178,314 + EX28DRAFT_0226 0.59 -0.7 178,314 + EX28DRAFT_0226 0.59 +0.8 178,315 - EX28DRAFT_0226 0.59 +0.7 178,338 + EX28DRAFT_0226 0.65 +1.8 178,471 - +0.1 178,489 - -3.0 178,624 + EX28DRAFT_0227 0.37 -1.0 178,624 + EX28DRAFT_0227 0.37 +0.2 178,624 + EX28DRAFT_0227 0.37 +0.1 178,624 + EX28DRAFT_0227 0.37 -0.1 178,625 - EX28DRAFT_0227 0.37 -1.8 178,712 + EX28DRAFT_0227 0.61 +0.6 178,783 + EX28DRAFT_0227 0.81 +0.5 178,783 + EX28DRAFT_0227 0.81 +1.0 178,784 - EX28DRAFT_0227 0.81 -0.1 178,804 - EX28DRAFT_0227 0.87 -0.9 178,896 - +0.2 178,896 - -1.2 178,898 - -0.5 179,035 + -0.8 179,064 + +0.2 179,064 + -1.0 179,077 + +0.5 179,077 + -1.0 179,077 + +0.6 179,135 + EX28DRAFT_0228 0.86 -1.3 179,179 + -0.0 179,179 + +1.1 179,179 + -0.8 179,180 - +0.8 179,180 - -1.8 179,269 + +0.2 179,347 + -0.1 179,348 - +0.1 179,348 - -0.2 179,482 - +0.8 179,512 - -0.6 179,597 - +0.2 179,601 - +1.4 179,622 - +2.4 179,668 - +0.4 179,736 - EX28DRAFT_0230 0.10 -0.6 179,736 - EX28DRAFT_0230 0.10 -0.8 179,838 - EX28DRAFT_0230 0.15 +0.7 179,875 - EX28DRAFT_0230 0.17 -0.3 179,877 + EX28DRAFT_0230 0.17 -0.4 179,959 + EX28DRAFT_0230 0.21 -0.9 179,975 + EX28DRAFT_0230 0.21 -0.8 180,019 + EX28DRAFT_0230 0.24 +2.8 180,060 - EX28DRAFT_0230 0.25 +0.3 180,115 - EX28DRAFT_0230 0.28 -0.2 180,138 - EX28DRAFT_0230 0.29 -0.1
Or see this region's nucleotide sequence