Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0148 and EX28DRAFT_0149 are separated by 301 nucleotides EX28DRAFT_0149 and EX28DRAFT_0150 are separated by 31 nucleotides
EX28DRAFT_0148: EX28DRAFT_0148 - Acetolactate synthase, at 92,619 to 94,544
_0148
EX28DRAFT_0149: EX28DRAFT_0149 - Predicted dehydrogenases and related proteins, at 94,846 to 95,832
_0149
EX28DRAFT_0150: EX28DRAFT_0150 - ABC-type sugar transport system, periplasmic component, at 95,864 to 96,793
_0150
Position (kb) 94
95
96 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 93.949 kb on + strand, within EX28DRAFT_0148 at 93.984 kb on + strand, within EX28DRAFT_0148 at 93.997 kb on - strand, within EX28DRAFT_0148 at 94.071 kb on + strand, within EX28DRAFT_0148 at 94.072 kb on - strand, within EX28DRAFT_0148 at 94.095 kb on + strand, within EX28DRAFT_0148 at 94.096 kb on - strand, within EX28DRAFT_0148 at 94.096 kb on - strand, within EX28DRAFT_0148 at 94.096 kb on - strand, within EX28DRAFT_0148 at 94.142 kb on + strand, within EX28DRAFT_0148 at 94.142 kb on + strand, within EX28DRAFT_0148 at 94.143 kb on - strand, within EX28DRAFT_0148 at 94.187 kb on + strand, within EX28DRAFT_0148 at 94.188 kb on - strand, within EX28DRAFT_0148 at 94.311 kb on + strand, within EX28DRAFT_0148 at 94.437 kb on + strand at 94.619 kb on - strand at 94.890 kb on - strand at 94.890 kb on - strand at 94.899 kb on + strand at 94.981 kb on + strand, within EX28DRAFT_0149 at 94.982 kb on - strand, within EX28DRAFT_0149 at 94.982 kb on - strand, within EX28DRAFT_0149 at 95.126 kb on + strand, within EX28DRAFT_0149 at 95.166 kb on - strand, within EX28DRAFT_0149 at 95.177 kb on - strand, within EX28DRAFT_0149 at 95.491 kb on + strand, within EX28DRAFT_0149 at 95.491 kb on + strand, within EX28DRAFT_0149 at 95.776 kb on + strand at 95.776 kb on + strand at 95.831 kb on - strand at 95.845 kb on + strand at 95.859 kb on + strand at 95.859 kb on + strand at 95.859 kb on + strand at 95.859 kb on + strand at 95.859 kb on + strand at 95.859 kb on + strand at 95.860 kb on - strand at 95.860 kb on - strand at 95.860 kb on - strand at 95.944 kb on + strand at 96.107 kb on - strand, within EX28DRAFT_0150 at 96.239 kb on + strand, within EX28DRAFT_0150 at 96.239 kb on + strand, within EX28DRAFT_0150 at 96.239 kb on + strand, within EX28DRAFT_0150 at 96.240 kb on - strand, within EX28DRAFT_0150 at 96.385 kb on + strand, within EX28DRAFT_0150 at 96.385 kb on + strand, within EX28DRAFT_0150 at 96.389 kb on + strand, within EX28DRAFT_0150 at 96.509 kb on - strand, within EX28DRAFT_0150 at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.794 kb on + strand at 96.794 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 93,949 + EX28DRAFT_0148 0.69 -0.4 93,984 + EX28DRAFT_0148 0.71 -1.1 93,997 - EX28DRAFT_0148 0.72 +0.3 94,071 + EX28DRAFT_0148 0.75 -0.9 94,072 - EX28DRAFT_0148 0.75 -0.1 94,095 + EX28DRAFT_0148 0.77 -1.6 94,096 - EX28DRAFT_0148 0.77 +1.4 94,096 - EX28DRAFT_0148 0.77 -3.6 94,096 - EX28DRAFT_0148 0.77 -0.7 94,142 + EX28DRAFT_0148 0.79 -0.3 94,142 + EX28DRAFT_0148 0.79 -0.9 94,143 - EX28DRAFT_0148 0.79 -0.1 94,187 + EX28DRAFT_0148 0.81 -1.3 94,188 - EX28DRAFT_0148 0.81 -1.0 94,311 + EX28DRAFT_0148 0.88 +0.4 94,437 + -0.6 94,619 - -0.4 94,890 - -0.3 94,890 - +0.0 94,899 + +0.1 94,981 + EX28DRAFT_0149 0.14 -2.2 94,982 - EX28DRAFT_0149 0.14 -1.1 94,982 - EX28DRAFT_0149 0.14 -0.2 95,126 + EX28DRAFT_0149 0.28 -1.4 95,166 - EX28DRAFT_0149 0.32 -3.5 95,177 - EX28DRAFT_0149 0.34 -0.5 95,491 + EX28DRAFT_0149 0.65 -0.6 95,491 + EX28DRAFT_0149 0.65 -0.6 95,776 + -0.0 95,776 + +0.1 95,831 - +0.7 95,845 + +0.7 95,859 + -0.8 95,859 + -0.2 95,859 + -0.4 95,859 + -0.1 95,859 + -0.8 95,859 + -0.7 95,860 - -0.8 95,860 - -0.7 95,860 - -0.2 95,944 + -0.7 96,107 - EX28DRAFT_0150 0.26 -0.1 96,239 + EX28DRAFT_0150 0.40 -0.2 96,239 + EX28DRAFT_0150 0.40 -0.5 96,239 + EX28DRAFT_0150 0.40 +0.1 96,240 - EX28DRAFT_0150 0.40 +0.1 96,385 + EX28DRAFT_0150 0.56 -0.6 96,385 + EX28DRAFT_0150 0.56 -0.0 96,389 + EX28DRAFT_0150 0.56 +0.1 96,509 - EX28DRAFT_0150 0.69 -0.3 96,791 + -0.7 96,791 + +0.1 96,791 + -0.7 96,791 + -0.3 96,791 + -0.1 96,791 + -0.0 96,791 + +0.2 96,791 + -0.6 96,791 + -0.2 96,792 - -1.3 96,792 - +0.9 96,792 - -0.5 96,792 - -0.6 96,792 - -3.4 96,792 - +0.2 96,792 - -2.1 96,792 - -1.5 96,792 - +0.2 96,794 + -0.4 96,794 + +0.1
Or see this region's nucleotide sequence