Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0072 and EX28DRAFT_0073 are separated by 31 nucleotides EX28DRAFT_0073 and EX28DRAFT_0074 overlap by 1 nucleotides EX28DRAFT_0074 and EX28DRAFT_0075 overlap by 4 nucleotides
EX28DRAFT_0072: EX28DRAFT_0072 - RNA polymerase sigma factor RpoE, at 14,572 to 15,147
_0072
EX28DRAFT_0073: EX28DRAFT_0073 - Negative regulator of sigma E activity, at 15,179 to 15,829
_0073
EX28DRAFT_0074: EX28DRAFT_0074 - sigma E regulatory protein, MucB/RseB, at 15,829 to 16,782
_0074
EX28DRAFT_0075: EX28DRAFT_0075 - positive regulator of sigma(E), RseC/MucC, at 16,779 to 17,255
_0075
Position (kb) 15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 14.206 kb on + strand at 14.206 kb on + strand at 14.206 kb on + strand at 14.206 kb on + strand at 14.207 kb on - strand at 14.207 kb on - strand at 14.207 kb on - strand at 14.207 kb on - strand at 14.272 kb on - strand at 14.328 kb on + strand at 14.329 kb on - strand at 14.406 kb on + strand at 14.406 kb on + strand at 14.406 kb on + strand at 14.406 kb on + strand at 14.407 kb on - strand at 15.120 kb on + strand at 15.542 kb on - strand, within EX28DRAFT_0073 at 15.544 kb on + strand, within EX28DRAFT_0073 at 15.970 kb on - strand, within EX28DRAFT_0074 at 15.981 kb on + strand, within EX28DRAFT_0074 at 15.982 kb on - strand, within EX28DRAFT_0074 at 16.049 kb on + strand, within EX28DRAFT_0074 at 16.050 kb on - strand, within EX28DRAFT_0074 at 16.145 kb on - strand, within EX28DRAFT_0074 at 16.146 kb on + strand, within EX28DRAFT_0074 at 16.147 kb on - strand, within EX28DRAFT_0074 at 16.174 kb on + strand, within EX28DRAFT_0074 at 16.204 kb on + strand, within EX28DRAFT_0074 at 16.212 kb on + strand, within EX28DRAFT_0074 at 16.288 kb on + strand, within EX28DRAFT_0074 at 16.294 kb on + strand, within EX28DRAFT_0074 at 16.294 kb on + strand, within EX28DRAFT_0074 at 16.294 kb on + strand, within EX28DRAFT_0074 at 16.294 kb on + strand, within EX28DRAFT_0074 at 16.294 kb on + strand, within EX28DRAFT_0074 at 16.294 kb on + strand, within EX28DRAFT_0074 at 16.295 kb on - strand, within EX28DRAFT_0074 at 16.295 kb on - strand, within EX28DRAFT_0074 at 16.295 kb on - strand, within EX28DRAFT_0074 at 16.295 kb on - strand, within EX28DRAFT_0074 at 16.295 kb on - strand, within EX28DRAFT_0074 at 16.295 kb on - strand, within EX28DRAFT_0074 at 16.482 kb on + strand, within EX28DRAFT_0074 at 16.585 kb on + strand, within EX28DRAFT_0074 at 16.618 kb on - strand, within EX28DRAFT_0074 at 16.680 kb on + strand, within EX28DRAFT_0074 at 16.681 kb on - strand, within EX28DRAFT_0074 at 16.761 kb on + strand at 16.761 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 14,206 + +0.4 14,206 + -0.0 14,206 + +0.8 14,206 + +0.7 14,207 - -0.2 14,207 - +0.7 14,207 - -0.5 14,207 - -0.1 14,272 - +0.8 14,328 + -0.4 14,329 - -3.3 14,406 + +0.6 14,406 + +1.0 14,406 + -0.1 14,406 + -0.0 14,407 - -1.1 15,120 + -0.2 15,542 - EX28DRAFT_0073 0.56 -1.6 15,544 + EX28DRAFT_0073 0.56 -0.8 15,970 - EX28DRAFT_0074 0.15 +0.8 15,981 + EX28DRAFT_0074 0.16 -2.0 15,982 - EX28DRAFT_0074 0.16 -0.8 16,049 + EX28DRAFT_0074 0.23 -2.8 16,050 - EX28DRAFT_0074 0.23 -0.8 16,145 - EX28DRAFT_0074 0.33 -0.2 16,146 + EX28DRAFT_0074 0.33 +0.5 16,147 - EX28DRAFT_0074 0.33 -0.3 16,174 + EX28DRAFT_0074 0.36 -0.9 16,204 + EX28DRAFT_0074 0.39 -0.5 16,212 + EX28DRAFT_0074 0.40 -0.7 16,288 + EX28DRAFT_0074 0.48 -2.8 16,294 + EX28DRAFT_0074 0.49 -0.9 16,294 + EX28DRAFT_0074 0.49 -1.5 16,294 + EX28DRAFT_0074 0.49 -0.8 16,294 + EX28DRAFT_0074 0.49 -1.3 16,294 + EX28DRAFT_0074 0.49 -0.1 16,294 + EX28DRAFT_0074 0.49 -3.1 16,295 - EX28DRAFT_0074 0.49 -1.1 16,295 - EX28DRAFT_0074 0.49 -1.3 16,295 - EX28DRAFT_0074 0.49 -0.8 16,295 - EX28DRAFT_0074 0.49 -0.6 16,295 - EX28DRAFT_0074 0.49 -1.0 16,295 - EX28DRAFT_0074 0.49 -0.5 16,482 + EX28DRAFT_0074 0.68 -1.6 16,585 + EX28DRAFT_0074 0.79 +0.0 16,618 - EX28DRAFT_0074 0.83 +0.8 16,680 + EX28DRAFT_0074 0.89 -0.3 16,681 - EX28DRAFT_0074 0.89 -1.2 16,761 + -0.9 16,761 + -0.5
Or see this region's nucleotide sequence