Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0035 and EX28DRAFT_0036 are separated by 57 nucleotides EX28DRAFT_0036 and EX28DRAFT_0037 are separated by 0 nucleotides EX28DRAFT_0037 and EX28DRAFT_0038 are separated by 146 nucleotides EX28DRAFT_0038 and EX28DRAFT_0039 are separated by 22 nucleotides
EX28DRAFT_0035: EX28DRAFT_0035 - Zn(II)-responsive transcriptional regulator, at 16,397 to 16,822
_0035
EX28DRAFT_0036: EX28DRAFT_0036 - Uncharacterized protein conserved in bacteria, at 16,880 to 17,095
_0036
EX28DRAFT_0037: EX28DRAFT_0037 - large conductance mechanosensitive channel protein, at 17,096 to 17,506
_0037
EX28DRAFT_0038: EX28DRAFT_0038 - K+ transport systems, NAD-binding component, at 17,653 to 19,029
_0038
EX28DRAFT_0039: EX28DRAFT_0039 - 16S rRNA (cytosine(967)-C(5))-methyltransferase, at 19,052 to 20,314
_0039
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.684 kb on + strand, within EX28DRAFT_0035 at 16.685 kb on - strand, within EX28DRAFT_0035 at 16.687 kb on - strand, within EX28DRAFT_0035 at 16.828 kb on - strand at 16.880 kb on - strand at 16.912 kb on + strand, within EX28DRAFT_0036 at 16.935 kb on + strand, within EX28DRAFT_0036 at 16.935 kb on + strand, within EX28DRAFT_0036 at 17.026 kb on + strand, within EX28DRAFT_0036 at 17.061 kb on + strand, within EX28DRAFT_0036 at 17.086 kb on + strand at 17.086 kb on + strand at 17.087 kb on - strand at 17.091 kb on - strand at 17.228 kb on - strand, within EX28DRAFT_0037 at 17.228 kb on - strand, within EX28DRAFT_0037 at 17.228 kb on - strand, within EX28DRAFT_0037 at 17.262 kb on - strand, within EX28DRAFT_0037 at 17.291 kb on + strand, within EX28DRAFT_0037 at 17.291 kb on + strand, within EX28DRAFT_0037 at 17.294 kb on + strand, within EX28DRAFT_0037 at 17.295 kb on - strand, within EX28DRAFT_0037 at 17.386 kb on + strand, within EX28DRAFT_0037 at 17.728 kb on + strand at 18.097 kb on - strand, within EX28DRAFT_0038 at 18.333 kb on + strand, within EX28DRAFT_0038 at 18.630 kb on - strand, within EX28DRAFT_0038 at 19.227 kb on + strand, within EX28DRAFT_0039 at 19.228 kb on - strand, within EX28DRAFT_0039 at 19.303 kb on + strand, within EX28DRAFT_0039 at 19.306 kb on + strand, within EX28DRAFT_0039 at 19.307 kb on - strand, within EX28DRAFT_0039 at 19.553 kb on - strand, within EX28DRAFT_0039 at 19.653 kb on - strand, within EX28DRAFT_0039 at 19.691 kb on + strand, within EX28DRAFT_0039 at 19.715 kb on + strand, within EX28DRAFT_0039
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 16,684 + EX28DRAFT_0035 0.67 -1.1 16,685 - EX28DRAFT_0035 0.68 +0.5 16,687 - EX28DRAFT_0035 0.68 -0.1 16,828 - -0.4 16,880 - +0.9 16,912 + EX28DRAFT_0036 0.15 -0.1 16,935 + EX28DRAFT_0036 0.25 -1.0 16,935 + EX28DRAFT_0036 0.25 +0.1 17,026 + EX28DRAFT_0036 0.68 -0.0 17,061 + EX28DRAFT_0036 0.84 +0.1 17,086 + +1.1 17,086 + +0.2 17,087 - -0.8 17,091 - +0.2 17,228 - EX28DRAFT_0037 0.32 +0.6 17,228 - EX28DRAFT_0037 0.32 +0.9 17,228 - EX28DRAFT_0037 0.32 -0.3 17,262 - EX28DRAFT_0037 0.40 +0.2 17,291 + EX28DRAFT_0037 0.47 -0.6 17,291 + EX28DRAFT_0037 0.47 -0.1 17,294 + EX28DRAFT_0037 0.48 +0.3 17,295 - EX28DRAFT_0037 0.48 +2.2 17,386 + EX28DRAFT_0037 0.71 +0.2 17,728 + -2.2 18,097 - EX28DRAFT_0038 0.32 -1.5 18,333 + EX28DRAFT_0038 0.49 -0.7 18,630 - EX28DRAFT_0038 0.71 -2.2 19,227 + EX28DRAFT_0039 0.14 +0.7 19,228 - EX28DRAFT_0039 0.14 +0.0 19,303 + EX28DRAFT_0039 0.20 -1.7 19,306 + EX28DRAFT_0039 0.20 -1.6 19,307 - EX28DRAFT_0039 0.20 +0.1 19,553 - EX28DRAFT_0039 0.40 +0.5 19,653 - EX28DRAFT_0039 0.48 -0.2 19,691 + EX28DRAFT_0039 0.51 +0.5 19,715 + EX28DRAFT_0039 0.52 +0.8
Or see this region's nucleotide sequence