Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0001 and EX28DRAFT_0002 are separated by 179 nucleotides EX28DRAFT_0002 and EX28DRAFT_0003 are separated by 72 nucleotides EX28DRAFT_0003 and EX28DRAFT_0004 overlap by 17 nucleotides
EX28DRAFT_0001: EX28DRAFT_0001 - Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain, at 1 to 504
_0001
EX28DRAFT_0002: EX28DRAFT_0002 - Bacterioferritin-associated ferredoxin, at 684 to 878
_0002
EX28DRAFT_0003: EX28DRAFT_0003 - bacterioferritin, at 951 to 1,427
_0003
EX28DRAFT_0004: EX28DRAFT_0004 - Type IV leader peptidase family, at 1,411 to 1,923
_0004
Position (kb) 0
1 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 0.075 kb on + strand, within EX28DRAFT_0001 at 0.081 kb on + strand, within EX28DRAFT_0001 at 0.313 kb on + strand, within EX28DRAFT_0001 at 0.567 kb on + strand at 0.568 kb on - strand at 0.568 kb on - strand at 0.568 kb on - strand at 0.684 kb on - strand at 0.684 kb on - strand at 0.687 kb on + strand at 0.688 kb on - strand at 0.697 kb on + strand at 0.698 kb on - strand at 0.701 kb on + strand at 0.701 kb on + strand at 0.701 kb on + strand at 0.724 kb on + strand, within EX28DRAFT_0002 at 0.803 kb on + strand, within EX28DRAFT_0002 at 0.811 kb on + strand, within EX28DRAFT_0002 at 0.812 kb on - strand, within EX28DRAFT_0002 at 0.812 kb on - strand, within EX28DRAFT_0002 at 0.812 kb on - strand, within EX28DRAFT_0002 at 0.862 kb on - strand at 0.916 kb on + strand at 0.945 kb on + strand at 0.947 kb on + strand at 0.947 kb on + strand at 0.947 kb on + strand at 0.948 kb on - strand at 0.948 kb on - strand at 0.948 kb on - strand at 0.948 kb on - strand at 0.948 kb on - strand at 0.948 kb on - strand at 0.949 kb on + strand at 0.950 kb on - strand at 0.950 kb on - strand at 1.024 kb on - strand, within EX28DRAFT_0003 at 1.024 kb on - strand, within EX28DRAFT_0003 at 1.061 kb on + strand, within EX28DRAFT_0003 at 1.061 kb on + strand, within EX28DRAFT_0003 at 1.122 kb on + strand, within EX28DRAFT_0003 at 1.122 kb on + strand, within EX28DRAFT_0003 at 1.123 kb on - strand, within EX28DRAFT_0003 at 1.123 kb on - strand, within EX28DRAFT_0003 at 1.123 kb on - strand, within EX28DRAFT_0003 at 1.282 kb on + strand, within EX28DRAFT_0003 at 1.283 kb on - strand, within EX28DRAFT_0003 at 1.283 kb on - strand, within EX28DRAFT_0003 at 1.283 kb on - strand, within EX28DRAFT_0003 at 1.290 kb on + strand, within EX28DRAFT_0003 at 1.291 kb on - strand, within EX28DRAFT_0003 at 1.291 kb on - strand, within EX28DRAFT_0003 at 1.395 kb on + strand at 1.444 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 75 + EX28DRAFT_0001 0.15 +0.2 81 + EX28DRAFT_0001 0.16 -2.2 313 + EX28DRAFT_0001 0.62 -1.1 567 + +0.3 568 - -0.1 568 - -1.0 568 - +0.3 684 - +0.4 684 - -0.4 687 + -0.1 688 - +0.3 697 + +0.6 698 - +0.2 701 + -0.8 701 + -0.0 701 + +0.5 724 + EX28DRAFT_0002 0.21 -3.1 803 + EX28DRAFT_0002 0.61 -0.3 811 + EX28DRAFT_0002 0.65 -1.0 812 - EX28DRAFT_0002 0.66 +0.1 812 - EX28DRAFT_0002 0.66 +0.4 812 - EX28DRAFT_0002 0.66 -0.6 862 - -0.2 916 + +0.0 945 + +0.6 947 + -0.3 947 + -0.0 947 + +0.4 948 - +0.3 948 - +0.1 948 - +0.0 948 - +1.3 948 - -1.3 948 - -0.5 949 + +0.5 950 - +0.4 950 - +0.4 1,024 - EX28DRAFT_0003 0.15 -1.1 1,024 - EX28DRAFT_0003 0.15 -0.1 1,061 + EX28DRAFT_0003 0.23 +0.0 1,061 + EX28DRAFT_0003 0.23 -0.5 1,122 + EX28DRAFT_0003 0.36 -0.3 1,122 + EX28DRAFT_0003 0.36 -0.2 1,123 - EX28DRAFT_0003 0.36 +1.4 1,123 - EX28DRAFT_0003 0.36 -0.5 1,123 - EX28DRAFT_0003 0.36 -0.5 1,282 + EX28DRAFT_0003 0.69 +0.6 1,283 - EX28DRAFT_0003 0.70 -0.0 1,283 - EX28DRAFT_0003 0.70 -0.0 1,283 - EX28DRAFT_0003 0.70 -0.6 1,290 + EX28DRAFT_0003 0.71 +0.1 1,291 - EX28DRAFT_0003 0.71 +0.6 1,291 - EX28DRAFT_0003 0.71 -0.6 1,395 + +0.9 1,444 + +0.5
Or see this region's nucleotide sequence