Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20795

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20790 and CA264_20795 are separated by 260 nucleotidesCA264_20795 and CA264_20800 are separated by 12 nucleotidesCA264_20800 and CA264_20805 overlap by 14 nucleotidesCA264_20805 and CA264_20810 are separated by 12 nucleotides CA264_20790: CA264_20790 - glyceraldehyde-3-phosphate dehydrogenase, at 19,276 to 20,313 _20790 CA264_20795: CA264_20795 - hypothetical protein, at 20,574 to 20,816 _20795 CA264_20800: CA264_20800 - hypothetical protein, at 20,829 to 21,056 _20800 CA264_20805: CA264_20805 - hypothetical protein, at 21,043 to 21,324 _20805 CA264_20810: CA264_20810 - transporter, at 21,337 to 22,167 _20810 Position (kb) 20 21Strain fitness (log2 ratio) -2 -1 0 1 2at 19.691 kb on - strand, within CA264_20790at 19.736 kb on - strand, within CA264_20790at 19.758 kb on + strand, within CA264_20790at 19.758 kb on + strand, within CA264_20790at 19.759 kb on - strand, within CA264_20790at 19.879 kb on - strand, within CA264_20790at 20.021 kb on - strandat 20.036 kb on - strand, within CA264_20790at 20.153 kb on + strand, within CA264_20790at 20.163 kb on - strand, within CA264_20790at 20.173 kb on + strand, within CA264_20790at 20.299 kb on + strandat 20.299 kb on + strandat 20.299 kb on + strandat 20.313 kb on + strandat 20.313 kb on + strandat 20.313 kb on + strandat 20.314 kb on - strandat 20.360 kb on + strandat 20.361 kb on - strandat 20.361 kb on - strandat 20.365 kb on - strandat 20.365 kb on - strandat 20.367 kb on - strandat 20.367 kb on - strandat 20.432 kb on + strandat 20.432 kb on + strandat 20.438 kb on + strandat 20.438 kb on + strandat 20.464 kb on + strandat 20.464 kb on + strandat 20.465 kb on - strandat 20.465 kb on - strandat 20.465 kb on - strandat 20.546 kb on + strandat 20.547 kb on - strandat 20.566 kb on + strandat 20.573 kb on + strandat 20.573 kb on + strandat 20.573 kb on + strandat 20.574 kb on - strandat 20.574 kb on - strandat 20.615 kb on + strand, within CA264_20795at 20.615 kb on + strand, within CA264_20795at 20.616 kb on - strand, within CA264_20795at 20.639 kb on + strand, within CA264_20795at 20.641 kb on + strand, within CA264_20795at 20.641 kb on + strand, within CA264_20795at 20.641 kb on + strand, within CA264_20795at 20.664 kb on + strand, within CA264_20795at 20.668 kb on + strand, within CA264_20795at 20.697 kb on + strand, within CA264_20795at 20.717 kb on - strand, within CA264_20795at 20.766 kb on + strand, within CA264_20795at 20.766 kb on + strand, within CA264_20795at 20.766 kb on + strand, within CA264_20795at 20.806 kb on + strandat 20.820 kb on + strandat 20.820 kb on + strandat 20.821 kb on - strandat 20.821 kb on - strandat 20.821 kb on - strandat 20.843 kb on - strandat 20.864 kb on + strand, within CA264_20800at 20.864 kb on + strand, within CA264_20800at 20.865 kb on - strand, within CA264_20800at 20.865 kb on - strand, within CA264_20800at 20.865 kb on - strand, within CA264_20800at 21.042 kb on + strandat 21.042 kb on + strandat 21.042 kb on + strandat 21.059 kb on + strandat 21.060 kb on - strandat 21.151 kb on - strand, within CA264_20805at 21.234 kb on - strand, within CA264_20805at 21.253 kb on - strand, within CA264_20805at 21.253 kb on - strand, within CA264_20805at 21.258 kb on - strand, within CA264_20805at 21.269 kb on + strand, within CA264_20805at 21.318 kb on + strandat 21.327 kb on - strandat 21.338 kb on + strandat 21.440 kb on - strand, within CA264_20810at 21.444 kb on + strand, within CA264_20810at 21.444 kb on + strand, within CA264_20810at 21.444 kb on + strand, within CA264_20810at 21.471 kb on + strand, within CA264_20810at 21.471 kb on + strand, within CA264_20810at 21.471 kb on + strand, within CA264_20810at 21.471 kb on + strand, within CA264_20810at 21.551 kb on + strand, within CA264_20810at 21.551 kb on + strand, within CA264_20810at 21.552 kb on - strand, within CA264_20810at 21.552 kb on - strand, within CA264_20810at 21.552 kb on - strand, within CA264_20810at 21.555 kb on + strand, within CA264_20810at 21.562 kb on + strand, within CA264_20810at 21.562 kb on + strand, within CA264_20810at 21.562 kb on + strand, within CA264_20810at 21.563 kb on - strand, within CA264_20810at 21.563 kb on - strand, within CA264_20810at 21.563 kb on - strand, within CA264_20810at 21.563 kb on - strand, within CA264_20810at 21.575 kb on - strand, within CA264_20810at 21.681 kb on + strand, within CA264_20810at 21.682 kb on - strand, within CA264_20810

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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19,691 - CA264_20790 0.40 +0.5
19,736 - CA264_20790 0.44 -1.7
19,758 + CA264_20790 0.46 -0.1
19,758 + CA264_20790 0.46 -0.4
19,759 - CA264_20790 0.47 -0.5
19,879 - CA264_20790 0.58 -0.0
20,021 - +2.6
20,036 - CA264_20790 0.73 -0.3
20,153 + CA264_20790 0.84 +0.4
20,163 - CA264_20790 0.85 +0.1
20,173 + CA264_20790 0.86 +0.7
20,299 + +0.3
20,299 + +0.1
20,299 + -0.8
20,313 + +0.0
20,313 + -0.9
20,313 + +0.8
20,314 - +0.4
20,360 + -1.4
20,361 - -0.4
20,361 - +0.3
20,365 - -1.2
20,365 - -1.3
20,367 - +0.0
20,367 - +0.1
20,432 + +0.0
20,432 + -0.1
20,438 + -0.2
20,438 + +0.2
20,464 + +0.7
20,464 + -1.0
20,465 - -0.6
20,465 - +0.5
20,465 - -0.6
20,546 + -1.8
20,547 - +0.0
20,566 + -0.6
20,573 + -1.0
20,573 + -0.8
20,573 + +0.6
20,574 - +1.1
20,574 - +1.0
20,615 + CA264_20795 0.17 +1.2
20,615 + CA264_20795 0.17 +0.3
20,616 - CA264_20795 0.17 -0.2
20,639 + CA264_20795 0.27 -0.5
20,641 + CA264_20795 0.28 -0.6
20,641 + CA264_20795 0.28 -0.3
20,641 + CA264_20795 0.28 +0.6
20,664 + CA264_20795 0.37 +0.1
20,668 + CA264_20795 0.39 +0.2
20,697 + CA264_20795 0.51 +0.2
20,717 - CA264_20795 0.59 +1.2
20,766 + CA264_20795 0.79 +0.2
20,766 + CA264_20795 0.79 -0.3
20,766 + CA264_20795 0.79 +0.1
20,806 + +0.6
20,820 + +1.8
20,820 + -0.3
20,821 - -1.8
20,821 - +0.6
20,821 - -0.1
20,843 - -0.1
20,864 + CA264_20800 0.15 +0.7
20,864 + CA264_20800 0.15 -0.7
20,865 - CA264_20800 0.16 +0.3
20,865 - CA264_20800 0.16 +0.1
20,865 - CA264_20800 0.16 +0.6
21,042 + -0.4
21,042 + -0.3
21,042 + +0.1
21,059 + -2.6
21,060 - -1.3
21,151 - CA264_20805 0.38 +1.2
21,234 - CA264_20805 0.68 -0.6
21,253 - CA264_20805 0.74 -0.5
21,253 - CA264_20805 0.74 +1.2
21,258 - CA264_20805 0.76 -0.1
21,269 + CA264_20805 0.80 -1.0
21,318 + -0.4
21,327 - -0.1
21,338 + -1.8
21,440 - CA264_20810 0.12 -0.9
21,444 + CA264_20810 0.13 -0.0
21,444 + CA264_20810 0.13 +0.6
21,444 + CA264_20810 0.13 +1.9
21,471 + CA264_20810 0.16 -1.8
21,471 + CA264_20810 0.16 -1.0
21,471 + CA264_20810 0.16 -0.9
21,471 + CA264_20810 0.16 -0.1
21,551 + CA264_20810 0.26 +2.2
21,551 + CA264_20810 0.26 +0.1
21,552 - CA264_20810 0.26 -0.6
21,552 - CA264_20810 0.26 +0.2
21,552 - CA264_20810 0.26 +0.1
21,555 + CA264_20810 0.26 -1.0
21,562 + CA264_20810 0.27 +0.2
21,562 + CA264_20810 0.27 -0.3
21,562 + CA264_20810 0.27 -0.8
21,563 - CA264_20810 0.27 -0.2
21,563 - CA264_20810 0.27 +0.5
21,563 - CA264_20810 0.27 +1.2
21,563 - CA264_20810 0.27 -0.1
21,575 - CA264_20810 0.29 +0.4
21,681 + CA264_20810 0.41 +0.4
21,682 - CA264_20810 0.42 -0.0

Or see this region's nucleotide sequence