Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20715

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20710 and CA264_20715 are separated by 10 nucleotides CA264_20710: CA264_20710 - hypothetical protein, at 4,768,966 to 4,769,721 _20710 CA264_20715: CA264_20715 - metallophosphatase, at 4,769,732 to 4,770,664 _20715 Position (kb) 4769 4770 4771Strain fitness (log2 ratio) -1 0 1at 4768.778 kb on + strandat 4768.833 kb on + strandat 4768.834 kb on - strandat 4768.834 kb on - strandat 4768.834 kb on - strandat 4768.844 kb on - strandat 4768.847 kb on + strandat 4768.887 kb on + strandat 4768.906 kb on - strandat 4768.906 kb on - strandat 4768.955 kb on + strandat 4768.961 kb on + strandat 4768.962 kb on - strandat 4769.092 kb on - strand, within CA264_20710at 4769.141 kb on + strand, within CA264_20710at 4769.162 kb on + strand, within CA264_20710at 4769.293 kb on - strand, within CA264_20710at 4769.405 kb on + strand, within CA264_20710at 4769.496 kb on + strand, within CA264_20710at 4769.497 kb on - strand, within CA264_20710at 4769.536 kb on - strand, within CA264_20710at 4769.652 kb on - strandat 4769.691 kb on + strandat 4769.692 kb on - strandat 4769.936 kb on - strand, within CA264_20715at 4770.009 kb on - strand, within CA264_20715at 4770.062 kb on + strand, within CA264_20715at 4770.063 kb on - strand, within CA264_20715at 4770.346 kb on - strand, within CA264_20715at 4770.364 kb on + strand, within CA264_20715at 4770.365 kb on - strand, within CA264_20715at 4770.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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4,768,778 + +0.6
4,768,833 + +0.5
4,768,834 - +0.9
4,768,834 - +0.0
4,768,834 - +0.6
4,768,844 - -0.2
4,768,847 + +1.0
4,768,887 + -0.1
4,768,906 - -0.3
4,768,906 - -0.4
4,768,955 + +0.6
4,768,961 + -0.1
4,768,962 - -0.6
4,769,092 - CA264_20710 0.17 -0.2
4,769,141 + CA264_20710 0.23 +0.2
4,769,162 + CA264_20710 0.26 +0.2
4,769,293 - CA264_20710 0.43 -0.9
4,769,405 + CA264_20710 0.58 +0.0
4,769,496 + CA264_20710 0.70 +1.7
4,769,497 - CA264_20710 0.70 +0.2
4,769,536 - CA264_20710 0.75 -0.0
4,769,652 - +1.0
4,769,691 + +0.3
4,769,692 - -0.1
4,769,936 - CA264_20715 0.22 +0.2
4,770,009 - CA264_20715 0.30 +0.2
4,770,062 + CA264_20715 0.35 +0.5
4,770,063 - CA264_20715 0.35 +0.2
4,770,346 - CA264_20715 0.66 +0.3
4,770,364 + CA264_20715 0.68 -0.1
4,770,365 - CA264_20715 0.68 +0.3
4,770,736 - +0.3

Or see this region's nucleotide sequence