Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20385

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20380 and CA264_20385 are separated by 310 nucleotidesCA264_20385 and CA264_20390 are separated by 127 nucleotides CA264_20380: CA264_20380 - lytic transglycosylase, at 4,696,135 to 4,698,423 _20380 CA264_20385: CA264_20385 - methyltransferase, at 4,698,734 to 4,699,378 _20385 CA264_20390: CA264_20390 - peptidase M16, at 4,699,506 to 4,700,738 _20390 Position (kb) 4698 4699 4700Strain fitness (log2 ratio) -1 0 1 2at 4697.846 kb on + strand, within CA264_20380at 4697.906 kb on + strand, within CA264_20380at 4697.907 kb on - strand, within CA264_20380at 4697.933 kb on + strand, within CA264_20380at 4697.934 kb on - strand, within CA264_20380at 4697.936 kb on + strand, within CA264_20380at 4697.966 kb on + strand, within CA264_20380at 4697.986 kb on - strand, within CA264_20380at 4698.233 kb on - strandat 4698.286 kb on + strandat 4698.532 kb on - strandat 4698.607 kb on - strandat 4698.660 kb on + strandat 4698.661 kb on - strandat 4698.662 kb on + strandat 4698.733 kb on - strandat 4698.862 kb on - strand, within CA264_20385at 4698.904 kb on + strand, within CA264_20385at 4698.904 kb on + strand, within CA264_20385at 4698.905 kb on - strand, within CA264_20385at 4698.945 kb on + strand, within CA264_20385at 4698.945 kb on + strand, within CA264_20385at 4698.945 kb on + strand, within CA264_20385at 4699.224 kb on + strand, within CA264_20385at 4699.449 kb on + strandat 4699.470 kb on - strandat 4699.476 kb on + strandat 4699.488 kb on + strandat 4699.488 kb on + strandat 4699.492 kb on - strandat 4699.492 kb on - strandat 4699.498 kb on + strandat 4699.515 kb on + strandat 4699.515 kb on + strandat 4699.519 kb on + strandat 4699.519 kb on + strandat 4699.520 kb on - strandat 4699.609 kb on - strandat 4699.631 kb on + strand, within CA264_20390at 4699.804 kb on - strand, within CA264_20390at 4699.828 kb on + strand, within CA264_20390at 4699.828 kb on + strand, within CA264_20390at 4699.855 kb on + strand, within CA264_20390at 4699.856 kb on - strand, within CA264_20390at 4699.864 kb on + strand, within CA264_20390at 4699.864 kb on + strand, within CA264_20390at 4699.864 kb on + strand, within CA264_20390at 4699.962 kb on - strand, within CA264_20390at 4699.996 kb on + strand, within CA264_20390at 4699.997 kb on - strand, within CA264_20390at 4699.997 kb on - strand, within CA264_20390at 4700.034 kb on - strand, within CA264_20390at 4700.062 kb on - strand, within CA264_20390at 4700.065 kb on + strand, within CA264_20390at 4700.065 kb on + strand, within CA264_20390at 4700.065 kb on + strand, within CA264_20390at 4700.065 kb on + strand, within CA264_20390at 4700.066 kb on - strand, within CA264_20390at 4700.066 kb on - strand, within CA264_20390at 4700.066 kb on - strand, within CA264_20390at 4700.066 kb on - strand, within CA264_20390at 4700.066 kb on - strand, within CA264_20390at 4700.073 kb on - strand, within CA264_20390at 4700.166 kb on + strand, within CA264_20390at 4700.341 kb on - strand, within CA264_20390at 4700.344 kb on + strand, within CA264_20390at 4700.344 kb on + strand, within CA264_20390

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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4,697,846 + CA264_20380 0.75 -0.2
4,697,906 + CA264_20380 0.77 -0.5
4,697,907 - CA264_20380 0.77 -0.2
4,697,933 + CA264_20380 0.79 -0.1
4,697,934 - CA264_20380 0.79 -1.4
4,697,936 + CA264_20380 0.79 +1.1
4,697,966 + CA264_20380 0.80 -0.5
4,697,986 - CA264_20380 0.81 +1.9
4,698,233 - -0.2
4,698,286 + -0.5
4,698,532 - -0.0
4,698,607 - +0.7
4,698,660 + +2.3
4,698,661 - +0.2
4,698,662 + -0.4
4,698,733 - -0.1
4,698,862 - CA264_20385 0.20 +0.6
4,698,904 + CA264_20385 0.26 +0.0
4,698,904 + CA264_20385 0.26 -0.4
4,698,905 - CA264_20385 0.27 +1.8
4,698,945 + CA264_20385 0.33 +0.3
4,698,945 + CA264_20385 0.33 +0.1
4,698,945 + CA264_20385 0.33 +1.1
4,699,224 + CA264_20385 0.76 +1.1
4,699,449 + -0.2
4,699,470 - -0.5
4,699,476 + -0.4
4,699,488 + -0.1
4,699,488 + -0.3
4,699,492 - +0.2
4,699,492 - -1.0
4,699,498 + -0.1
4,699,515 + +0.5
4,699,515 + -0.0
4,699,519 + -0.2
4,699,519 + -0.7
4,699,520 - -0.4
4,699,609 - +0.4
4,699,631 + CA264_20390 0.10 -0.1
4,699,804 - CA264_20390 0.24 -0.4
4,699,828 + CA264_20390 0.26 +1.3
4,699,828 + CA264_20390 0.26 -0.0
4,699,855 + CA264_20390 0.28 +0.5
4,699,856 - CA264_20390 0.28 -0.1
4,699,864 + CA264_20390 0.29 -0.2
4,699,864 + CA264_20390 0.29 -0.1
4,699,864 + CA264_20390 0.29 +0.5
4,699,962 - CA264_20390 0.37 +0.2
4,699,996 + CA264_20390 0.40 +0.2
4,699,997 - CA264_20390 0.40 -0.4
4,699,997 - CA264_20390 0.40 -0.2
4,700,034 - CA264_20390 0.43 -1.0
4,700,062 - CA264_20390 0.45 +0.3
4,700,065 + CA264_20390 0.45 +0.0
4,700,065 + CA264_20390 0.45 +0.4
4,700,065 + CA264_20390 0.45 +0.2
4,700,065 + CA264_20390 0.45 -0.8
4,700,066 - CA264_20390 0.45 +1.6
4,700,066 - CA264_20390 0.45 +0.7
4,700,066 - CA264_20390 0.45 -0.8
4,700,066 - CA264_20390 0.45 +0.3
4,700,066 - CA264_20390 0.45 -0.4
4,700,073 - CA264_20390 0.46 +0.1
4,700,166 + CA264_20390 0.54 -0.8
4,700,341 - CA264_20390 0.68 -0.4
4,700,344 + CA264_20390 0.68 +0.3
4,700,344 + CA264_20390 0.68 +0.2

Or see this region's nucleotide sequence