Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20010

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20005 and CA264_20010 are separated by 178 nucleotidesCA264_20010 and CA264_20015 overlap by 8 nucleotides CA264_20005: CA264_20005 - endonuclease/exonuclease/phosphatase, at 4,612,036 to 4,613,136 _20005 CA264_20010: CA264_20010 - gliding motility lipoprotein GldH, at 4,613,315 to 4,613,800 _20010 CA264_20015: CA264_20015 - Signal peptidase-like protein, at 4,613,793 to 4,615,244 _20015 Position (kb) 4613 4614Strain fitness (log2 ratio) -2 -1 0 1 2at 4612.322 kb on + strand, within CA264_20005at 4612.386 kb on + strand, within CA264_20005at 4612.539 kb on + strand, within CA264_20005at 4612.649 kb on + strand, within CA264_20005at 4612.649 kb on + strand, within CA264_20005at 4612.649 kb on + strand, within CA264_20005at 4612.649 kb on + strand, within CA264_20005at 4612.650 kb on - strand, within CA264_20005at 4612.650 kb on - strand, within CA264_20005at 4612.650 kb on - strand, within CA264_20005at 4612.671 kb on + strand, within CA264_20005at 4612.793 kb on + strand, within CA264_20005at 4612.794 kb on - strand, within CA264_20005at 4612.877 kb on - strand, within CA264_20005at 4612.907 kb on + strand, within CA264_20005at 4612.907 kb on + strand, within CA264_20005at 4612.908 kb on - strand, within CA264_20005at 4612.908 kb on - strand, within CA264_20005at 4612.908 kb on - strand, within CA264_20005at 4612.913 kb on - strand, within CA264_20005at 4612.950 kb on + strand, within CA264_20005at 4612.951 kb on - strand, within CA264_20005at 4612.951 kb on - strand, within CA264_20005at 4612.956 kb on - strand, within CA264_20005at 4612.972 kb on + strand, within CA264_20005at 4612.979 kb on + strand, within CA264_20005at 4612.979 kb on + strand, within CA264_20005at 4612.979 kb on + strand, within CA264_20005at 4612.991 kb on + strand, within CA264_20005at 4612.991 kb on + strand, within CA264_20005at 4613.002 kb on + strand, within CA264_20005at 4613.024 kb on - strand, within CA264_20005at 4613.107 kb on - strandat 4613.113 kb on + strandat 4613.114 kb on - strandat 4613.114 kb on - strandat 4613.119 kb on + strandat 4613.119 kb on + strandat 4613.120 kb on - strandat 4613.121 kb on + strandat 4613.122 kb on - strandat 4613.167 kb on - strandat 4613.233 kb on + strandat 4613.251 kb on - strandat 4613.311 kb on + strandat 4613.316 kb on + strandat 4613.316 kb on + strandat 4613.412 kb on + strand, within CA264_20010at 4613.412 kb on + strand, within CA264_20010at 4613.412 kb on + strand, within CA264_20010at 4613.466 kb on + strand, within CA264_20010at 4613.583 kb on + strand, within CA264_20010at 4613.592 kb on + strand, within CA264_20010at 4613.595 kb on + strand, within CA264_20010at 4613.596 kb on - strand, within CA264_20010at 4613.611 kb on + strand, within CA264_20010at 4613.611 kb on + strand, within CA264_20010at 4613.651 kb on - strand, within CA264_20010at 4613.688 kb on - strand, within CA264_20010at 4613.728 kb on - strand, within CA264_20010at 4614.583 kb on + strand, within CA264_20015

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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4,612,322 + CA264_20005 0.26 -0.1
4,612,386 + CA264_20005 0.32 +0.6
4,612,539 + CA264_20005 0.46 -0.3
4,612,649 + CA264_20005 0.56 -0.1
4,612,649 + CA264_20005 0.56 +0.2
4,612,649 + CA264_20005 0.56 +0.3
4,612,649 + CA264_20005 0.56 +0.5
4,612,650 - CA264_20005 0.56 +0.6
4,612,650 - CA264_20005 0.56 +0.4
4,612,650 - CA264_20005 0.56 -1.5
4,612,671 + CA264_20005 0.58 -0.4
4,612,793 + CA264_20005 0.69 +0.5
4,612,794 - CA264_20005 0.69 -0.3
4,612,877 - CA264_20005 0.76 -0.5
4,612,907 + CA264_20005 0.79 +0.8
4,612,907 + CA264_20005 0.79 +0.3
4,612,908 - CA264_20005 0.79 +0.6
4,612,908 - CA264_20005 0.79 +0.3
4,612,908 - CA264_20005 0.79 -0.1
4,612,913 - CA264_20005 0.80 +0.4
4,612,950 + CA264_20005 0.83 +1.0
4,612,951 - CA264_20005 0.83 +0.1
4,612,951 - CA264_20005 0.83 -0.1
4,612,956 - CA264_20005 0.84 +0.2
4,612,972 + CA264_20005 0.85 +0.1
4,612,979 + CA264_20005 0.86 +0.4
4,612,979 + CA264_20005 0.86 -0.0
4,612,979 + CA264_20005 0.86 -0.4
4,612,991 + CA264_20005 0.87 +2.0
4,612,991 + CA264_20005 0.87 +0.4
4,613,002 + CA264_20005 0.88 -0.2
4,613,024 - CA264_20005 0.90 -0.8
4,613,107 - +0.8
4,613,113 + -0.3
4,613,114 - +1.3
4,613,114 - -0.3
4,613,119 + +0.1
4,613,119 + -0.0
4,613,120 - -1.0
4,613,121 + -1.1
4,613,122 - -0.2
4,613,167 - +1.0
4,613,233 + -0.6
4,613,251 - -0.2
4,613,311 + -2.4
4,613,316 + +0.1
4,613,316 + -0.5
4,613,412 + CA264_20010 0.20 +1.3
4,613,412 + CA264_20010 0.20 +0.2
4,613,412 + CA264_20010 0.20 +1.2
4,613,466 + CA264_20010 0.31 +0.9
4,613,583 + CA264_20010 0.55 +1.0
4,613,592 + CA264_20010 0.57 +0.7
4,613,595 + CA264_20010 0.58 +0.5
4,613,596 - CA264_20010 0.58 +1.0
4,613,611 + CA264_20010 0.61 +1.6
4,613,611 + CA264_20010 0.61 +0.7
4,613,651 - CA264_20010 0.69 -1.6
4,613,688 - CA264_20010 0.77 +1.2
4,613,728 - CA264_20010 0.85 +0.4
4,614,583 + CA264_20015 0.54 +0.8

Or see this region's nucleotide sequence