Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19845

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19835 and CA264_19840 are separated by 18 nucleotidesCA264_19840 and CA264_19845 are separated by 55 nucleotidesCA264_19845 and CA264_19850 are separated by 149 nucleotides CA264_19835: CA264_19835 - chorismate synthase, at 4,577,288 to 4,578,367 _19835 CA264_19840: CA264_19840 - hypothetical protein, at 4,578,386 to 4,578,619 _19840 CA264_19845: CA264_19845 - hypothetical protein, at 4,578,675 to 4,579,271 _19845 CA264_19850: CA264_19850 - citrate transporter, at 4,579,421 to 4,580,806 _19850 Position (kb) 4578 4579 4580Strain fitness (log2 ratio) -3 -2 -1 0 1at 4578.354 kb on + strandat 4578.355 kb on - strandat 4578.365 kb on + strandat 4578.366 kb on - strandat 4578.391 kb on + strandat 4578.392 kb on - strandat 4578.392 kb on - strandat 4578.439 kb on - strand, within CA264_19840at 4578.542 kb on - strand, within CA264_19840at 4578.601 kb on + strandat 4578.657 kb on + strandat 4578.658 kb on - strandat 4578.677 kb on - strandat 4578.677 kb on - strandat 4578.707 kb on + strandat 4578.707 kb on + strandat 4578.812 kb on - strand, within CA264_19845at 4578.842 kb on + strand, within CA264_19845at 4578.842 kb on + strand, within CA264_19845at 4578.843 kb on - strand, within CA264_19845at 4578.873 kb on - strand, within CA264_19845at 4578.878 kb on + strand, within CA264_19845at 4578.879 kb on - strand, within CA264_19845at 4578.915 kb on + strand, within CA264_19845at 4578.915 kb on + strand, within CA264_19845at 4578.915 kb on + strand, within CA264_19845at 4578.916 kb on - strand, within CA264_19845at 4578.916 kb on - strand, within CA264_19845at 4578.965 kb on + strand, within CA264_19845at 4578.966 kb on - strand, within CA264_19845at 4578.970 kb on + strand, within CA264_19845at 4578.970 kb on + strand, within CA264_19845at 4578.971 kb on - strand, within CA264_19845at 4578.984 kb on + strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.986 kb on + strand, within CA264_19845at 4579.006 kb on + strand, within CA264_19845at 4579.007 kb on - strand, within CA264_19845at 4579.023 kb on + strand, within CA264_19845at 4579.024 kb on - strand, within CA264_19845at 4579.024 kb on - strand, within CA264_19845at 4579.024 kb on - strand, within CA264_19845at 4579.113 kb on + strand, within CA264_19845at 4579.113 kb on + strand, within CA264_19845at 4579.117 kb on + strand, within CA264_19845at 4579.117 kb on + strand, within CA264_19845at 4579.117 kb on + strand, within CA264_19845at 4579.118 kb on - strand, within CA264_19845at 4579.118 kb on - strand, within CA264_19845at 4579.118 kb on - strand, within CA264_19845at 4579.118 kb on - strand, within CA264_19845at 4579.208 kb on + strand, within CA264_19845at 4579.208 kb on + strand, within CA264_19845at 4579.208 kb on + strand, within CA264_19845at 4579.209 kb on - strand, within CA264_19845at 4579.283 kb on - strandat 4579.302 kb on - strandat 4579.304 kb on - strandat 4579.306 kb on - strandat 4579.306 kb on - strandat 4579.390 kb on + strandat 4579.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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4,578,354 + -0.9
4,578,355 - +1.0
4,578,365 + -1.3
4,578,366 - -0.6
4,578,391 + +1.3
4,578,392 - -0.5
4,578,392 - -0.2
4,578,439 - CA264_19840 0.23 +0.0
4,578,542 - CA264_19840 0.67 +0.2
4,578,601 + -0.4
4,578,657 + -0.0
4,578,658 - -0.1
4,578,677 - +1.6
4,578,677 - -0.2
4,578,707 + +0.6
4,578,707 + -2.1
4,578,812 - CA264_19845 0.23 -0.1
4,578,842 + CA264_19845 0.28 -1.5
4,578,842 + CA264_19845 0.28 -0.8
4,578,843 - CA264_19845 0.28 -0.6
4,578,873 - CA264_19845 0.33 +0.7
4,578,878 + CA264_19845 0.34 +0.8
4,578,879 - CA264_19845 0.34 -0.4
4,578,915 + CA264_19845 0.40 -1.4
4,578,915 + CA264_19845 0.40 -0.3
4,578,915 + CA264_19845 0.40 -1.9
4,578,916 - CA264_19845 0.40 -0.4
4,578,916 - CA264_19845 0.40 -1.9
4,578,965 + CA264_19845 0.49 -0.9
4,578,966 - CA264_19845 0.49 -0.2
4,578,970 + CA264_19845 0.49 +0.3
4,578,970 + CA264_19845 0.49 -0.0
4,578,971 - CA264_19845 0.50 -0.1
4,578,984 + CA264_19845 0.52 -0.1
4,578,985 - CA264_19845 0.52 +0.0
4,578,985 - CA264_19845 0.52 -0.4
4,578,985 - CA264_19845 0.52 -0.3
4,578,985 - CA264_19845 0.52 +0.3
4,578,985 - CA264_19845 0.52 +1.3
4,578,985 - CA264_19845 0.52 -1.8
4,578,985 - CA264_19845 0.52 +0.3
4,578,985 - CA264_19845 0.52 +0.3
4,578,985 - CA264_19845 0.52 -0.2
4,578,985 - CA264_19845 0.52 +1.0
4,578,985 - CA264_19845 0.52 -0.8
4,578,986 + CA264_19845 0.52 -3.0
4,579,006 + CA264_19845 0.55 -1.0
4,579,007 - CA264_19845 0.56 +1.6
4,579,023 + CA264_19845 0.58 -2.5
4,579,024 - CA264_19845 0.58 -0.7
4,579,024 - CA264_19845 0.58 -0.0
4,579,024 - CA264_19845 0.58 +0.2
4,579,113 + CA264_19845 0.73 +0.6
4,579,113 + CA264_19845 0.73 +0.7
4,579,117 + CA264_19845 0.74 -0.2
4,579,117 + CA264_19845 0.74 -1.0
4,579,117 + CA264_19845 0.74 -1.4
4,579,118 - CA264_19845 0.74 -0.3
4,579,118 - CA264_19845 0.74 +1.3
4,579,118 - CA264_19845 0.74 +0.1
4,579,118 - CA264_19845 0.74 -0.3
4,579,208 + CA264_19845 0.89 +1.0
4,579,208 + CA264_19845 0.89 -1.0
4,579,208 + CA264_19845 0.89 -1.1
4,579,209 - CA264_19845 0.89 -0.9
4,579,283 - -0.4
4,579,302 - -0.6
4,579,304 - -0.6
4,579,306 - -0.4
4,579,306 - +0.3
4,579,390 + -0.6
4,579,423 - +0.4

Or see this region's nucleotide sequence