Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19825

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19820 and CA264_19825 are separated by 18 nucleotidesCA264_19825 and CA264_19830 are separated by 531 nucleotides CA264_19820: CA264_19820 - dessication-associated protein, at 4,573,815 to 4,574,618 _19820 CA264_19825: CA264_19825 - Tat (twin-arginine translocation) pathway signal sequence containing protein, at 4,574,637 to 4,575,305 _19825 CA264_19830: CA264_19830 - hypothetical protein, at 4,575,837 to 4,577,285 _19830 Position (kb) 4574 4575 4576Strain fitness (log2 ratio) -2 -1 0 1at 4573.638 kb on - strandat 4573.638 kb on - strandat 4573.668 kb on - strandat 4573.711 kb on - strandat 4573.777 kb on - strandat 4574.094 kb on + strand, within CA264_19820at 4574.134 kb on + strand, within CA264_19820at 4574.237 kb on + strand, within CA264_19820at 4574.238 kb on - strand, within CA264_19820at 4574.270 kb on + strand, within CA264_19820at 4574.387 kb on + strand, within CA264_19820at 4574.387 kb on + strand, within CA264_19820at 4574.387 kb on + strand, within CA264_19820at 4574.387 kb on + strand, within CA264_19820at 4574.389 kb on + strand, within CA264_19820at 4574.466 kb on - strand, within CA264_19820at 4574.466 kb on - strand, within CA264_19820at 4574.505 kb on + strand, within CA264_19820at 4574.568 kb on + strandat 4574.569 kb on - strandat 4574.581 kb on - strandat 4574.611 kb on - strandat 4574.612 kb on + strandat 4574.638 kb on + strandat 4574.675 kb on + strandat 4574.676 kb on - strandat 4574.808 kb on + strand, within CA264_19825at 4574.840 kb on - strand, within CA264_19825at 4574.955 kb on + strand, within CA264_19825at 4574.955 kb on + strand, within CA264_19825at 4574.955 kb on + strand, within CA264_19825at 4575.031 kb on - strand, within CA264_19825at 4575.031 kb on - strand, within CA264_19825at 4575.110 kb on + strand, within CA264_19825at 4575.142 kb on + strand, within CA264_19825at 4575.148 kb on + strand, within CA264_19825at 4575.149 kb on - strand, within CA264_19825at 4575.250 kb on - strandat 4575.354 kb on - strandat 4575.390 kb on + strandat 4575.390 kb on + strandat 4575.468 kb on - strandat 4575.557 kb on + strandat 4575.557 kb on + strandat 4575.557 kb on + strandat 4575.557 kb on + strandat 4575.560 kb on - strandat 4575.561 kb on + strandat 4575.561 kb on + strandat 4575.562 kb on - strandat 4575.567 kb on + strandat 4575.570 kb on - strandat 4575.570 kb on - strandat 4575.600 kb on - strandat 4575.605 kb on - strandat 4575.612 kb on - strandat 4575.797 kb on + strandat 4575.878 kb on - strandat 4575.990 kb on + strand, within CA264_19830at 4575.990 kb on + strand, within CA264_19830at 4575.991 kb on - strand, within CA264_19830at 4575.991 kb on - strand, within CA264_19830at 4576.036 kb on - strand, within CA264_19830at 4576.125 kb on + strand, within CA264_19830at 4576.128 kb on - strand, within CA264_19830at 4576.189 kb on + strand, within CA264_19830at 4576.189 kb on + strand, within CA264_19830at 4576.189 kb on + strand, within CA264_19830at 4576.189 kb on + strand, within CA264_19830at 4576.229 kb on + strand, within CA264_19830at 4576.303 kb on + strand, within CA264_19830at 4576.304 kb on - strand, within CA264_19830

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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4,573,638 - -1.4
4,573,638 - -0.4
4,573,668 - -1.3
4,573,711 - -0.4
4,573,777 - -0.1
4,574,094 + CA264_19820 0.35 +0.1
4,574,134 + CA264_19820 0.40 -0.6
4,574,237 + CA264_19820 0.52 +0.9
4,574,238 - CA264_19820 0.53 -0.4
4,574,270 + CA264_19820 0.57 +0.3
4,574,387 + CA264_19820 0.71 +0.1
4,574,387 + CA264_19820 0.71 -0.6
4,574,387 + CA264_19820 0.71 -0.4
4,574,387 + CA264_19820 0.71 +0.7
4,574,389 + CA264_19820 0.71 -0.9
4,574,466 - CA264_19820 0.81 -0.9
4,574,466 - CA264_19820 0.81 +0.1
4,574,505 + CA264_19820 0.86 -0.2
4,574,568 + -1.3
4,574,569 - -0.6
4,574,581 - -1.1
4,574,611 - -0.4
4,574,612 + +0.2
4,574,638 + +0.4
4,574,675 + +0.2
4,574,676 - +0.0
4,574,808 + CA264_19825 0.26 +0.1
4,574,840 - CA264_19825 0.30 -0.5
4,574,955 + CA264_19825 0.48 -0.5
4,574,955 + CA264_19825 0.48 +0.6
4,574,955 + CA264_19825 0.48 +0.1
4,575,031 - CA264_19825 0.59 -0.2
4,575,031 - CA264_19825 0.59 +0.2
4,575,110 + CA264_19825 0.71 +0.1
4,575,142 + CA264_19825 0.75 -0.4
4,575,148 + CA264_19825 0.76 -0.4
4,575,149 - CA264_19825 0.77 +1.6
4,575,250 - +0.3
4,575,354 - -0.5
4,575,390 + +1.4
4,575,390 + +0.1
4,575,468 - +0.2
4,575,557 + -0.7
4,575,557 + +0.6
4,575,557 + -0.7
4,575,557 + +0.2
4,575,560 - -0.3
4,575,561 + -1.5
4,575,561 + -0.6
4,575,562 - -0.3
4,575,567 + +0.1
4,575,570 - -1.3
4,575,570 - -0.2
4,575,600 - -0.4
4,575,605 - +0.6
4,575,612 - -0.3
4,575,797 + +0.2
4,575,878 - -0.4
4,575,990 + CA264_19830 0.11 -0.6
4,575,990 + CA264_19830 0.11 -0.1
4,575,991 - CA264_19830 0.11 -0.7
4,575,991 - CA264_19830 0.11 -0.3
4,576,036 - CA264_19830 0.14 -2.2
4,576,125 + CA264_19830 0.20 -2.1
4,576,128 - CA264_19830 0.20 -1.5
4,576,189 + CA264_19830 0.24 -1.1
4,576,189 + CA264_19830 0.24 -1.5
4,576,189 + CA264_19830 0.24 -0.7
4,576,189 + CA264_19830 0.24 -2.7
4,576,229 + CA264_19830 0.27 -1.1
4,576,303 + CA264_19830 0.32 +0.8
4,576,304 - CA264_19830 0.32 -0.3

Or see this region's nucleotide sequence