Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19590

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19580 and CA264_19585 are separated by 8 nucleotidesCA264_19585 and CA264_19590 are separated by 151 nucleotidesCA264_19590 and CA264_19595 are separated by 179 nucleotides CA264_19580: CA264_19580 - hypothetical protein, at 4,524,082 to 4,524,684 _19580 CA264_19585: CA264_19585 - hypothetical protein, at 4,524,693 to 4,525,493 _19585 CA264_19590: CA264_19590 - heat-shock protein Hsp20, at 4,525,645 to 4,526,151 _19590 CA264_19595: CA264_19595 - deoxyribonuclease HsdR, at 4,526,331 to 4,527,821 _19595 Position (kb) 4525 4526 4527Strain fitness (log2 ratio) -2 -1 0 1at 4524.706 kb on + strandat 4524.707 kb on - strandat 4524.708 kb on + strandat 4524.721 kb on + strandat 4524.973 kb on + strand, within CA264_19585at 4524.974 kb on - strand, within CA264_19585at 4525.046 kb on + strand, within CA264_19585at 4525.057 kb on - strand, within CA264_19585at 4525.057 kb on - strand, within CA264_19585at 4525.083 kb on + strand, within CA264_19585at 4525.087 kb on + strand, within CA264_19585at 4525.322 kb on + strand, within CA264_19585at 4525.323 kb on - strand, within CA264_19585at 4525.338 kb on + strand, within CA264_19585at 4525.339 kb on - strand, within CA264_19585at 4525.341 kb on + strand, within CA264_19585at 4525.341 kb on + strand, within CA264_19585at 4525.341 kb on + strand, within CA264_19585at 4525.341 kb on + strand, within CA264_19585at 4525.342 kb on - strand, within CA264_19585at 4525.342 kb on - strand, within CA264_19585at 4525.342 kb on - strand, within CA264_19585at 4525.345 kb on - strand, within CA264_19585at 4525.345 kb on - strand, within CA264_19585at 4525.368 kb on - strand, within CA264_19585at 4525.399 kb on - strand, within CA264_19585at 4525.449 kb on + strandat 4525.450 kb on - strandat 4525.481 kb on + strandat 4525.484 kb on + strandat 4525.526 kb on - strandat 4525.596 kb on + strandat 4525.622 kb on - strandat 4525.638 kb on + strandat 4525.638 kb on + strandat 4525.638 kb on + strandat 4525.644 kb on + strandat 4525.645 kb on - strandat 4525.653 kb on + strandat 4525.654 kb on - strandat 4525.660 kb on + strandat 4525.661 kb on - strandat 4525.702 kb on - strand, within CA264_19590at 4525.756 kb on - strand, within CA264_19590at 4525.958 kb on - strand, within CA264_19590at 4525.958 kb on - strand, within CA264_19590at 4525.989 kb on + strand, within CA264_19590at 4525.989 kb on + strand, within CA264_19590at 4525.989 kb on + strand, within CA264_19590at 4525.989 kb on + strand, within CA264_19590at 4526.205 kb on - strandat 4526.214 kb on + strandat 4526.227 kb on + strandat 4526.240 kb on + strandat 4526.250 kb on + strandat 4526.251 kb on - strandat 4526.251 kb on - strandat 4526.267 kb on - strandat 4526.267 kb on - strandat 4526.271 kb on - strandat 4526.271 kb on - strandat 4526.279 kb on + strandat 4526.280 kb on - strandat 4526.280 kb on - strandat 4526.293 kb on - strandat 4526.299 kb on + strandat 4526.301 kb on + strandat 4526.304 kb on + strandat 4526.304 kb on + strandat 4526.306 kb on + strandat 4526.311 kb on + strandat 4526.404 kb on - strandat 4526.458 kb on + strandat 4526.458 kb on + strandat 4526.458 kb on + strandat 4526.465 kb on + strandat 4526.466 kb on - strandat 4526.569 kb on - strand, within CA264_19595at 4526.593 kb on - strand, within CA264_19595at 4526.717 kb on + strand, within CA264_19595at 4526.731 kb on + strand, within CA264_19595at 4526.752 kb on + strand, within CA264_19595at 4526.753 kb on - strand, within CA264_19595at 4526.753 kb on - strand, within CA264_19595at 4526.753 kb on - strand, within CA264_19595at 4526.861 kb on - strand, within CA264_19595at 4526.937 kb on - strand, within CA264_19595at 4526.982 kb on - strand, within CA264_19595

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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4,524,706 + +0.1
4,524,707 - +0.3
4,524,708 + -0.7
4,524,721 + +1.7
4,524,973 + CA264_19585 0.35 -0.0
4,524,974 - CA264_19585 0.35 +0.3
4,525,046 + CA264_19585 0.44 -0.8
4,525,057 - CA264_19585 0.45 -0.5
4,525,057 - CA264_19585 0.45 -0.5
4,525,083 + CA264_19585 0.49 -0.1
4,525,087 + CA264_19585 0.49 +0.1
4,525,322 + CA264_19585 0.79 -0.4
4,525,323 - CA264_19585 0.79 -0.4
4,525,338 + CA264_19585 0.81 +0.2
4,525,339 - CA264_19585 0.81 -1.1
4,525,341 + CA264_19585 0.81 +1.0
4,525,341 + CA264_19585 0.81 +0.1
4,525,341 + CA264_19585 0.81 +0.4
4,525,341 + CA264_19585 0.81 +0.5
4,525,342 - CA264_19585 0.81 -0.1
4,525,342 - CA264_19585 0.81 +0.8
4,525,342 - CA264_19585 0.81 +1.4
4,525,345 - CA264_19585 0.81 -0.0
4,525,345 - CA264_19585 0.81 -0.6
4,525,368 - CA264_19585 0.84 -0.0
4,525,399 - CA264_19585 0.88 -0.1
4,525,449 + +1.3
4,525,450 - -0.9
4,525,481 + -0.8
4,525,484 + -0.4
4,525,526 - +0.7
4,525,596 + +0.2
4,525,622 - -0.3
4,525,638 + -0.4
4,525,638 + +0.9
4,525,638 + -1.0
4,525,644 + -0.5
4,525,645 - -0.3
4,525,653 + -1.2
4,525,654 - +0.4
4,525,660 + -1.0
4,525,661 - -0.4
4,525,702 - CA264_19590 0.11 -0.1
4,525,756 - CA264_19590 0.22 -0.4
4,525,958 - CA264_19590 0.62 -1.3
4,525,958 - CA264_19590 0.62 -0.6
4,525,989 + CA264_19590 0.68 -1.6
4,525,989 + CA264_19590 0.68 -0.1
4,525,989 + CA264_19590 0.68 -0.4
4,525,989 + CA264_19590 0.68 +0.1
4,526,205 - -0.4
4,526,214 + +0.4
4,526,227 + -0.1
4,526,240 + +0.7
4,526,250 + -0.1
4,526,251 - +0.0
4,526,251 - -1.6
4,526,267 - +0.1
4,526,267 - +0.1
4,526,271 - +0.3
4,526,271 - +0.8
4,526,279 + +0.0
4,526,280 - +0.3
4,526,280 - +0.6
4,526,293 - +0.5
4,526,299 + +0.1
4,526,301 + -0.7
4,526,304 + +0.2
4,526,304 + +0.0
4,526,306 + +0.8
4,526,311 + +0.2
4,526,404 - -0.9
4,526,458 + +0.8
4,526,458 + -0.6
4,526,458 + -0.6
4,526,465 + -0.7
4,526,466 - -1.0
4,526,569 - CA264_19595 0.16 -0.8
4,526,593 - CA264_19595 0.18 +0.0
4,526,717 + CA264_19595 0.26 -1.0
4,526,731 + CA264_19595 0.27 +0.0
4,526,752 + CA264_19595 0.28 -0.2
4,526,753 - CA264_19595 0.28 +0.4
4,526,753 - CA264_19595 0.28 +1.4
4,526,753 - CA264_19595 0.28 -0.6
4,526,861 - CA264_19595 0.36 -1.1
4,526,937 - CA264_19595 0.41 -2.0
4,526,982 - CA264_19595 0.44 -0.9

Or see this region's nucleotide sequence