Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17895

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17890 and CA264_17895 are separated by 148 nucleotidesCA264_17895 and CA264_17900 are separated by 235 nucleotides CA264_17890: CA264_17890 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase, at 4,159,082 to 4,160,119 _17890 CA264_17895: CA264_17895 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 4,160,268 to 4,161,122 _17895 CA264_17900: CA264_17900 - UDP-N-acetyl-D-galactosamine dehydrogenase, at 4,161,358 to 4,162,647 _17900 Position (kb) 4160 4161 4162Strain fitness (log2 ratio) -1 0 1 2at 4160.120 kb on - strandat 4160.145 kb on + strandat 4160.145 kb on + strandat 4160.213 kb on + strandat 4160.216 kb on + strandat 4160.224 kb on + strandat 4160.224 kb on + strandat 4160.844 kb on + strand, within CA264_17895at 4161.143 kb on + strandat 4161.144 kb on - strandat 4161.244 kb on + strandat 4161.244 kb on + strandat 4161.244 kb on + strandat 4161.245 kb on - strandat 4161.245 kb on - strandat 4161.332 kb on + strandat 4161.345 kb on - strandat 4161.345 kb on - strandat 4161.345 kb on - strandat 4161.351 kb on + strandat 4161.355 kb on + strandat 4161.356 kb on - strandat 4161.356 kb on - strandat 4161.361 kb on + strandat 4161.376 kb on - strandat 4161.376 kb on - strandat 4161.399 kb on + strandat 4161.412 kb on + strandat 4161.413 kb on - strandat 4161.475 kb on - strandat 4161.475 kb on - strandat 4161.618 kb on + strand, within CA264_17900at 4161.619 kb on - strand, within CA264_17900at 4161.630 kb on + strand, within CA264_17900at 4161.630 kb on + strand, within CA264_17900at 4161.631 kb on - strand, within CA264_17900at 4161.706 kb on + strand, within CA264_17900at 4161.706 kb on + strand, within CA264_17900at 4161.706 kb on + strand, within CA264_17900at 4161.804 kb on + strand, within CA264_17900at 4161.804 kb on + strand, within CA264_17900at 4161.844 kb on - strand, within CA264_17900at 4161.844 kb on - strand, within CA264_17900at 4161.922 kb on + strand, within CA264_17900at 4161.935 kb on + strand, within CA264_17900at 4161.963 kb on + strand, within CA264_17900at 4162.053 kb on + strand, within CA264_17900at 4162.072 kb on + strand, within CA264_17900

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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4,160,120 - -0.6
4,160,145 + -0.2
4,160,145 + +0.4
4,160,213 + +0.4
4,160,216 + +0.9
4,160,224 + +0.4
4,160,224 + -0.3
4,160,844 + CA264_17895 0.67 +0.1
4,161,143 + +1.1
4,161,144 - +0.1
4,161,244 + +0.6
4,161,244 + -0.8
4,161,244 + +0.1
4,161,245 - -1.4
4,161,245 - +2.4
4,161,332 + +1.7
4,161,345 - +1.3
4,161,345 - -0.0
4,161,345 - +0.3
4,161,351 + +0.1
4,161,355 + +1.7
4,161,356 - -0.2
4,161,356 - -1.4
4,161,361 + +0.4
4,161,376 - +0.5
4,161,376 - +0.1
4,161,399 + +0.5
4,161,412 + +0.3
4,161,413 - -0.6
4,161,475 - +0.4
4,161,475 - +0.1
4,161,618 + CA264_17900 0.20 -0.5
4,161,619 - CA264_17900 0.20 +0.3
4,161,630 + CA264_17900 0.21 -0.2
4,161,630 + CA264_17900 0.21 -0.1
4,161,631 - CA264_17900 0.21 +0.9
4,161,706 + CA264_17900 0.27 -0.5
4,161,706 + CA264_17900 0.27 +1.3
4,161,706 + CA264_17900 0.27 +0.7
4,161,804 + CA264_17900 0.35 -0.1
4,161,804 + CA264_17900 0.35 -0.5
4,161,844 - CA264_17900 0.38 +1.4
4,161,844 - CA264_17900 0.38 -0.1
4,161,922 + CA264_17900 0.44 +0.7
4,161,935 + CA264_17900 0.45 +1.4
4,161,963 + CA264_17900 0.47 +0.3
4,162,053 + CA264_17900 0.54 -0.2
4,162,072 + CA264_17900 0.55 -0.4

Or see this region's nucleotide sequence