Experiment: m.b. Nickel (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17710 and CA264_17715 are separated by 242 nucleotides CA264_17715 and CA264_17720 are separated by 66 nucleotides
CA264_17710: CA264_17710 - hypothetical protein, at 4,121,077 to 4,121,814
_17710
CA264_17715: CA264_17715 - hypothetical protein, at 4,122,057 to 4,122,557
_17715
CA264_17720: CA264_17720 - beta-ketoadipyl CoA thiolase, at 4,122,624 to 4,123,823
_17720
Position (kb)
4122
4123 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4121.068 kb on - strand at 4121.090 kb on + strand at 4121.090 kb on + strand at 4121.091 kb on - strand at 4121.091 kb on - strand at 4121.093 kb on + strand at 4121.144 kb on + strand at 4121.145 kb on - strand at 4121.149 kb on - strand at 4121.149 kb on - strand at 4121.184 kb on - strand, within CA264_17710 at 4121.189 kb on + strand, within CA264_17710 at 4121.190 kb on - strand, within CA264_17710 at 4121.220 kb on + strand, within CA264_17710 at 4121.221 kb on - strand, within CA264_17710 at 4121.224 kb on + strand, within CA264_17710 at 4121.224 kb on + strand, within CA264_17710 at 4121.225 kb on - strand, within CA264_17710 at 4121.235 kb on - strand, within CA264_17710 at 4121.239 kb on - strand, within CA264_17710 at 4121.260 kb on + strand, within CA264_17710 at 4121.297 kb on - strand, within CA264_17710 at 4121.297 kb on - strand, within CA264_17710 at 4121.298 kb on + strand, within CA264_17710 at 4121.299 kb on - strand, within CA264_17710 at 4121.316 kb on - strand, within CA264_17710 at 4121.381 kb on - strand, within CA264_17710 at 4121.458 kb on + strand, within CA264_17710 at 4121.459 kb on - strand, within CA264_17710 at 4121.459 kb on - strand, within CA264_17710 at 4121.476 kb on + strand, within CA264_17710 at 4121.476 kb on + strand, within CA264_17710 at 4121.704 kb on + strand, within CA264_17710 at 4121.704 kb on + strand, within CA264_17710 at 4121.705 kb on - strand, within CA264_17710 at 4121.710 kb on + strand, within CA264_17710 at 4121.711 kb on - strand, within CA264_17710 at 4121.716 kb on + strand, within CA264_17710 at 4121.716 kb on + strand, within CA264_17710 at 4121.717 kb on - strand, within CA264_17710 at 4121.744 kb on - strand at 4121.744 kb on - strand at 4121.750 kb on - strand at 4121.883 kb on + strand at 4121.888 kb on + strand at 4121.981 kb on - strand at 4122.021 kb on + strand at 4122.552 kb on + strand at 4122.557 kb on + strand at 4122.557 kb on + strand at 4122.557 kb on + strand at 4122.558 kb on - strand at 4122.558 kb on - strand at 4122.572 kb on - strand at 4122.582 kb on - strand at 4122.595 kb on - strand at 4122.629 kb on + strand at 4122.629 kb on + strand at 4122.629 kb on + strand at 4122.636 kb on + strand at 4122.636 kb on + strand at 4122.636 kb on + strand at 4122.637 kb on - strand at 4122.639 kb on - strand at 4122.639 kb on - strand at 4122.640 kb on + strand at 4122.640 kb on + strand at 4122.641 kb on - strand at 4122.641 kb on - strand at 4122.648 kb on - strand at 4122.649 kb on + strand at 4122.649 kb on + strand at 4122.650 kb on - strand at 4122.653 kb on + strand at 4122.653 kb on + strand at 4122.653 kb on + strand at 4122.654 kb on - strand at 4122.654 kb on - strand at 4122.823 kb on + strand, within CA264_17720 at 4122.824 kb on - strand, within CA264_17720 at 4122.875 kb on + strand, within CA264_17720 at 4122.911 kb on + strand, within CA264_17720 at 4122.911 kb on + strand, within CA264_17720 at 4122.932 kb on + strand, within CA264_17720 at 4122.955 kb on + strand, within CA264_17720 at 4122.956 kb on - strand, within CA264_17720 at 4122.957 kb on + strand, within CA264_17720 at 4122.981 kb on - strand, within CA264_17720 at 4123.023 kb on + strand, within CA264_17720 at 4123.045 kb on - strand, within CA264_17720 at 4123.071 kb on - strand, within CA264_17720 at 4123.080 kb on - strand, within CA264_17720 at 4123.089 kb on - strand, within CA264_17720 at 4123.182 kb on - strand, within CA264_17720 at 4123.182 kb on - strand, within CA264_17720 at 4123.182 kb on - strand, within CA264_17720 at 4123.193 kb on - strand, within CA264_17720 at 4123.197 kb on + strand, within CA264_17720 at 4123.197 kb on + strand, within CA264_17720 at 4123.388 kb on - strand, within CA264_17720 at 4123.443 kb on - strand, within CA264_17720 at 4123.443 kb on - strand, within CA264_17720 at 4123.490 kb on - strand, within CA264_17720 at 4123.555 kb on + strand, within CA264_17720 at 4123.556 kb on - strand, within CA264_17720
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM remove 4,121,068 - -1.1 4,121,090 + -1.8 4,121,090 + +0.3 4,121,091 - +0.4 4,121,091 - -0.0 4,121,093 + +0.3 4,121,144 + +0.2 4,121,145 - -0.5 4,121,149 - +0.2 4,121,149 - +0.9 4,121,184 - CA264_17710 0.14 -0.3 4,121,189 + CA264_17710 0.15 -0.4 4,121,190 - CA264_17710 0.15 -0.1 4,121,220 + CA264_17710 0.19 -1.0 4,121,221 - CA264_17710 0.20 -0.1 4,121,224 + CA264_17710 0.20 +0.3 4,121,224 + CA264_17710 0.20 -0.4 4,121,225 - CA264_17710 0.20 -0.4 4,121,235 - CA264_17710 0.21 +0.7 4,121,239 - CA264_17710 0.22 +0.4 4,121,260 + CA264_17710 0.25 +0.7 4,121,297 - CA264_17710 0.30 +0.4 4,121,297 - CA264_17710 0.30 -0.4 4,121,298 + CA264_17710 0.30 -0.6 4,121,299 - CA264_17710 0.30 -0.7 4,121,316 - CA264_17710 0.32 +0.8 4,121,381 - CA264_17710 0.41 +0.6 4,121,458 + CA264_17710 0.52 +1.5 4,121,459 - CA264_17710 0.52 +1.5 4,121,459 - CA264_17710 0.52 +0.8 4,121,476 + CA264_17710 0.54 -0.1 4,121,476 + CA264_17710 0.54 -1.7 4,121,704 + CA264_17710 0.85 +0.7 4,121,704 + CA264_17710 0.85 -1.5 4,121,705 - CA264_17710 0.85 -0.9 4,121,710 + CA264_17710 0.86 -0.6 4,121,711 - CA264_17710 0.86 -0.8 4,121,716 + CA264_17710 0.87 -0.4 4,121,716 + CA264_17710 0.87 -0.5 4,121,717 - CA264_17710 0.87 +1.4 4,121,744 - +0.1 4,121,744 - -0.2 4,121,750 - +0.8 4,121,883 + +0.5 4,121,888 + +0.1 4,121,981 - +1.7 4,122,021 + -0.5 4,122,552 + +0.2 4,122,557 + -0.4 4,122,557 + +1.2 4,122,557 + -1.4 4,122,558 - +1.0 4,122,558 - -0.6 4,122,572 - +0.3 4,122,582 - -0.3 4,122,595 - +0.9 4,122,629 + -0.7 4,122,629 + -0.1 4,122,629 + +0.8 4,122,636 + +0.3 4,122,636 + -0.8 4,122,636 + +1.8 4,122,637 - +1.1 4,122,639 - -0.4 4,122,639 - +0.5 4,122,640 + +0.1 4,122,640 + -0.4 4,122,641 - -0.6 4,122,641 - +0.0 4,122,648 - -0.7 4,122,649 + -0.7 4,122,649 + +0.9 4,122,650 - -0.3 4,122,653 + +1.0 4,122,653 + -1.8 4,122,653 + -0.2 4,122,654 - +0.5 4,122,654 - -0.1 4,122,823 + CA264_17720 0.17 -1.1 4,122,824 - CA264_17720 0.17 -0.6 4,122,875 + CA264_17720 0.21 -0.4 4,122,911 + CA264_17720 0.24 -0.9 4,122,911 + CA264_17720 0.24 -0.5 4,122,932 + CA264_17720 0.26 -0.9 4,122,955 + CA264_17720 0.28 -0.1 4,122,956 - CA264_17720 0.28 -0.2 4,122,957 + CA264_17720 0.28 -1.5 4,122,981 - CA264_17720 0.30 -0.8 4,123,023 + CA264_17720 0.33 -0.1 4,123,045 - CA264_17720 0.35 -0.9 4,123,071 - CA264_17720 0.37 -0.2 4,123,080 - CA264_17720 0.38 +0.2 4,123,089 - CA264_17720 0.39 -0.5 4,123,182 - CA264_17720 0.47 +0.0 4,123,182 - CA264_17720 0.47 -0.9 4,123,182 - CA264_17720 0.47 -0.6 4,123,193 - CA264_17720 0.47 -1.9 4,123,197 + CA264_17720 0.48 -1.0 4,123,197 + CA264_17720 0.48 -0.2 4,123,388 - CA264_17720 0.64 -1.3 4,123,443 - CA264_17720 0.68 +0.2 4,123,443 - CA264_17720 0.68 -1.4 4,123,490 - CA264_17720 0.72 +0.7 4,123,555 + CA264_17720 0.78 +2.0 4,123,556 - CA264_17720 0.78 -0.0
Or see this region's nucleotide sequence