Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15775

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15770 and CA264_15775 are separated by 138 nucleotidesCA264_15775 and CA264_15780 overlap by 20 nucleotidesCA264_15780 and CA264_15785 are separated by 30 nucleotides CA264_15770: CA264_15770 - FAD-dependent oxidoreductase, at 3,681,557 to 3,682,672 _15770 CA264_15775: CA264_15775 - type III polyketide synthase, at 3,682,811 to 3,683,938 _15775 CA264_15780: CA264_15780 - SAM-dependent methyltransferase, at 3,683,919 to 3,684,620 _15780 CA264_15785: CA264_15785 - hypothetical protein, at 3,684,651 to 3,684,857 _15785 Position (kb) 3682 3683 3684Strain fitness (log2 ratio) -3 -2 -1 0 1at 3681.819 kb on + strand, within CA264_15770at 3681.843 kb on - strand, within CA264_15770at 3681.845 kb on - strand, within CA264_15770at 3681.853 kb on + strand, within CA264_15770at 3681.857 kb on + strand, within CA264_15770at 3681.858 kb on - strand, within CA264_15770at 3681.863 kb on + strand, within CA264_15770at 3681.863 kb on + strand, within CA264_15770at 3681.864 kb on - strand, within CA264_15770at 3681.943 kb on + strand, within CA264_15770at 3682.017 kb on + strand, within CA264_15770at 3682.061 kb on + strand, within CA264_15770at 3682.073 kb on - strand, within CA264_15770at 3682.076 kb on + strand, within CA264_15770at 3682.076 kb on + strand, within CA264_15770at 3682.077 kb on - strand, within CA264_15770at 3682.120 kb on + strand, within CA264_15770at 3682.121 kb on - strand, within CA264_15770at 3682.126 kb on + strand, within CA264_15770at 3682.181 kb on + strand, within CA264_15770at 3682.312 kb on + strand, within CA264_15770at 3682.363 kb on + strand, within CA264_15770at 3682.425 kb on + strand, within CA264_15770at 3682.425 kb on + strand, within CA264_15770at 3682.426 kb on - strand, within CA264_15770at 3682.426 kb on - strand, within CA264_15770at 3682.464 kb on - strand, within CA264_15770at 3682.464 kb on - strand, within CA264_15770at 3682.642 kb on + strandat 3682.686 kb on - strandat 3682.686 kb on - strandat 3682.686 kb on - strandat 3682.754 kb on - strandat 3682.766 kb on + strandat 3682.767 kb on - strandat 3682.767 kb on - strandat 3682.767 kb on - strandat 3682.768 kb on + strandat 3682.769 kb on - strandat 3682.775 kb on + strandat 3682.775 kb on + strandat 3682.775 kb on + strandat 3682.788 kb on + strandat 3682.789 kb on - strandat 3682.789 kb on - strandat 3682.789 kb on - strandat 3682.795 kb on + strandat 3682.795 kb on + strandat 3682.929 kb on + strand, within CA264_15775at 3682.930 kb on - strand, within CA264_15775at 3682.968 kb on - strand, within CA264_15775at 3682.985 kb on + strand, within CA264_15775at 3682.986 kb on - strand, within CA264_15775at 3682.986 kb on - strand, within CA264_15775at 3683.016 kb on - strand, within CA264_15775at 3683.123 kb on - strand, within CA264_15775at 3683.146 kb on - strand, within CA264_15775at 3683.189 kb on + strand, within CA264_15775at 3683.189 kb on + strand, within CA264_15775at 3683.189 kb on + strand, within CA264_15775at 3683.190 kb on - strand, within CA264_15775at 3683.190 kb on - strand, within CA264_15775at 3683.190 kb on - strand, within CA264_15775at 3683.266 kb on + strand, within CA264_15775at 3683.472 kb on + strand, within CA264_15775at 3683.473 kb on - strand, within CA264_15775at 3683.604 kb on + strand, within CA264_15775at 3683.638 kb on + strand, within CA264_15775at 3683.674 kb on - strand, within CA264_15775at 3683.706 kb on + strand, within CA264_15775at 3683.707 kb on - strand, within CA264_15775at 3683.707 kb on - strand, within CA264_15775at 3683.707 kb on - strand, within CA264_15775at 3683.882 kb on - strandat 3683.893 kb on + strandat 3683.893 kb on + strandat 3683.894 kb on - strandat 3683.894 kb on - strandat 3683.908 kb on - strandat 3683.908 kb on - strandat 3683.908 kb on - strandat 3683.913 kb on - strandat 3683.924 kb on - strandat 3683.924 kb on - strandat 3684.040 kb on + strand, within CA264_15780at 3684.040 kb on + strand, within CA264_15780at 3684.165 kb on - strand, within CA264_15780at 3684.213 kb on + strand, within CA264_15780at 3684.214 kb on - strand, within CA264_15780at 3684.297 kb on + strand, within CA264_15780at 3684.297 kb on + strand, within CA264_15780at 3684.445 kb on - strand, within CA264_15780at 3684.564 kb on + strandat 3684.564 kb on + strandat 3684.619 kb on - strandat 3684.662 kb on + strandat 3684.662 kb on + strandat 3684.662 kb on + strandat 3684.668 kb on + strandat 3684.716 kb on + strand, within CA264_15785at 3684.717 kb on - strand, within CA264_15785at 3684.761 kb on - strand, within CA264_15785

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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3,681,819 + CA264_15770 0.23 -1.7
3,681,843 - CA264_15770 0.26 -0.3
3,681,845 - CA264_15770 0.26 +0.0
3,681,853 + CA264_15770 0.27 -0.9
3,681,857 + CA264_15770 0.27 -0.5
3,681,858 - CA264_15770 0.27 -0.7
3,681,863 + CA264_15770 0.27 -2.5
3,681,863 + CA264_15770 0.27 -1.4
3,681,864 - CA264_15770 0.28 -0.5
3,681,943 + CA264_15770 0.35 -0.6
3,682,017 + CA264_15770 0.41 -0.1
3,682,061 + CA264_15770 0.45 -0.5
3,682,073 - CA264_15770 0.46 -3.5
3,682,076 + CA264_15770 0.47 -2.0
3,682,076 + CA264_15770 0.47 -0.6
3,682,077 - CA264_15770 0.47 -0.4
3,682,120 + CA264_15770 0.50 -0.5
3,682,121 - CA264_15770 0.51 -0.3
3,682,126 + CA264_15770 0.51 -0.2
3,682,181 + CA264_15770 0.56 -1.5
3,682,312 + CA264_15770 0.68 -0.9
3,682,363 + CA264_15770 0.72 -3.3
3,682,425 + CA264_15770 0.78 -1.7
3,682,425 + CA264_15770 0.78 -2.0
3,682,426 - CA264_15770 0.78 +0.5
3,682,426 - CA264_15770 0.78 +0.0
3,682,464 - CA264_15770 0.81 -0.9
3,682,464 - CA264_15770 0.81 -0.2
3,682,642 + -1.6
3,682,686 - +1.6
3,682,686 - -0.2
3,682,686 - -0.7
3,682,754 - -2.0
3,682,766 + +0.6
3,682,767 - -2.2
3,682,767 - -0.8
3,682,767 - -0.5
3,682,768 + +0.6
3,682,769 - -1.0
3,682,775 + -2.0
3,682,775 + -1.3
3,682,775 + -1.6
3,682,788 + -0.2
3,682,789 - +0.1
3,682,789 - -0.6
3,682,789 - -0.8
3,682,795 + -1.0
3,682,795 + -2.0
3,682,929 + CA264_15775 0.10 -1.5
3,682,930 - CA264_15775 0.11 -2.3
3,682,968 - CA264_15775 0.14 -2.0
3,682,985 + CA264_15775 0.15 -0.4
3,682,986 - CA264_15775 0.16 -0.6
3,682,986 - CA264_15775 0.16 -0.9
3,683,016 - CA264_15775 0.18 -2.0
3,683,123 - CA264_15775 0.28 -1.6
3,683,146 - CA264_15775 0.30 -0.8
3,683,189 + CA264_15775 0.34 -1.6
3,683,189 + CA264_15775 0.34 -0.3
3,683,189 + CA264_15775 0.34 -1.0
3,683,190 - CA264_15775 0.34 -0.9
3,683,190 - CA264_15775 0.34 -0.7
3,683,190 - CA264_15775 0.34 -1.2
3,683,266 + CA264_15775 0.40 -1.5
3,683,472 + CA264_15775 0.59 -2.2
3,683,473 - CA264_15775 0.59 -0.9
3,683,604 + CA264_15775 0.70 -2.8
3,683,638 + CA264_15775 0.73 -2.4
3,683,674 - CA264_15775 0.77 -1.3
3,683,706 + CA264_15775 0.79 -2.0
3,683,707 - CA264_15775 0.79 -1.5
3,683,707 - CA264_15775 0.79 -0.1
3,683,707 - CA264_15775 0.79 -0.8
3,683,882 - -0.5
3,683,893 + -1.0
3,683,893 + +0.9
3,683,894 - -1.3
3,683,894 - -0.2
3,683,908 - -1.5
3,683,908 - +0.1
3,683,908 - -1.2
3,683,913 - -1.0
3,683,924 - -1.5
3,683,924 - -0.3
3,684,040 + CA264_15780 0.17 -1.2
3,684,040 + CA264_15780 0.17 -0.9
3,684,165 - CA264_15780 0.35 -0.6
3,684,213 + CA264_15780 0.42 -0.4
3,684,214 - CA264_15780 0.42 -1.4
3,684,297 + CA264_15780 0.54 -0.8
3,684,297 + CA264_15780 0.54 -2.3
3,684,445 - CA264_15780 0.75 -0.5
3,684,564 + -0.5
3,684,564 + +0.8
3,684,619 - -1.8
3,684,662 + -1.3
3,684,662 + +1.4
3,684,662 + -2.3
3,684,668 + -0.3
3,684,716 + CA264_15785 0.31 -0.7
3,684,717 - CA264_15785 0.32 +0.7
3,684,761 - CA264_15785 0.53 -0.0

Or see this region's nucleotide sequence