Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15255

Experiment: m.b. Nickel (II) chloride 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_15245 and CA264_15250 are separated by 11 nucleotidesCA264_15250 and CA264_15255 overlap by 4 nucleotidesCA264_15255 and CA264_15260 are separated by 39 nucleotidesCA264_15260 and CA264_15265 are separated by 108 nucleotides CA264_15245: CA264_15245 - hypothetical protein, at 3,570,864 to 3,572,252 _15245 CA264_15250: CA264_15250 - cbs domain containing protein, at 3,572,264 to 3,572,929 _15250 CA264_15255: CA264_15255 - alpha/beta hydrolase, at 3,572,926 to 3,573,699 _15255 CA264_15260: CA264_15260 - glutamine amidotransferase, at 3,573,739 to 3,574,320 _15260 CA264_15265: CA264_15265 - colicin v production protein, at 3,574,429 to 3,574,947 _15265 Position (kb) 3572 3573 3574Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3571.939 kb on + strand, within CA264_15245at 3571.998 kb on - strand, within CA264_15245at 3571.999 kb on + strand, within CA264_15245at 3572.005 kb on - strand, within CA264_15245at 3572.005 kb on - strand, within CA264_15245at 3572.008 kb on + strand, within CA264_15245at 3572.227 kb on - strandat 3572.270 kb on - strandat 3572.270 kb on - strandat 3572.270 kb on - strandat 3572.278 kb on - strandat 3572.455 kb on - strand, within CA264_15250at 3572.455 kb on - strand, within CA264_15250at 3572.455 kb on - strand, within CA264_15250at 3572.620 kb on - strand, within CA264_15250at 3572.689 kb on - strand, within CA264_15250at 3572.803 kb on - strand, within CA264_15250at 3572.944 kb on - strandat 3572.944 kb on - strandat 3572.968 kb on + strandat 3573.021 kb on + strand, within CA264_15255at 3573.021 kb on + strand, within CA264_15255at 3573.022 kb on - strand, within CA264_15255at 3573.025 kb on + strand, within CA264_15255at 3573.087 kb on + strand, within CA264_15255at 3573.088 kb on - strand, within CA264_15255at 3573.130 kb on + strand, within CA264_15255at 3573.131 kb on - strand, within CA264_15255at 3573.153 kb on + strand, within CA264_15255at 3573.154 kb on - strand, within CA264_15255at 3573.157 kb on - strand, within CA264_15255at 3573.157 kb on - strand, within CA264_15255at 3573.201 kb on + strand, within CA264_15255at 3573.226 kb on + strand, within CA264_15255at 3573.274 kb on - strand, within CA264_15255at 3573.274 kb on - strand, within CA264_15255at 3573.297 kb on - strand, within CA264_15255at 3573.584 kb on - strand, within CA264_15255at 3573.638 kb on - strandat 3573.658 kb on + strandat 3573.663 kb on - strandat 3573.663 kb on - strandat 3573.663 kb on - strandat 3573.668 kb on + strandat 3573.763 kb on - strandat 3573.771 kb on + strandat 3573.771 kb on + strandat 3573.774 kb on + strandat 3573.775 kb on - strandat 3573.929 kb on - strand, within CA264_15260at 3574.269 kb on - strandat 3574.269 kb on - strandat 3574.283 kb on + strandat 3574.284 kb on - strandat 3574.287 kb on + strandat 3574.288 kb on - strandat 3574.331 kb on - strandat 3574.334 kb on + strandat 3574.394 kb on - strandat 3574.394 kb on - strandat 3574.481 kb on + strand, within CA264_15265at 3574.482 kb on - strand, within CA264_15265at 3574.482 kb on - strand, within CA264_15265at 3574.503 kb on - strand, within CA264_15265at 3574.503 kb on - strand, within CA264_15265at 3574.589 kb on + strand, within CA264_15265at 3574.589 kb on + strand, within CA264_15265at 3574.590 kb on - strand, within CA264_15265at 3574.633 kb on + strand, within CA264_15265at 3574.634 kb on - strand, within CA264_15265at 3574.634 kb on - strand, within CA264_15265at 3574.635 kb on + strand, within CA264_15265at 3574.636 kb on - strand, within CA264_15265at 3574.636 kb on - strand, within CA264_15265

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
remove
3,571,939 + CA264_15245 0.77 -0.5
3,571,998 - CA264_15245 0.82 -0.8
3,571,999 + CA264_15245 0.82 -1.1
3,572,005 - CA264_15245 0.82 +0.1
3,572,005 - CA264_15245 0.82 +0.3
3,572,008 + CA264_15245 0.82 +0.3
3,572,227 - +0.4
3,572,270 - -0.4
3,572,270 - -0.3
3,572,270 - -0.1
3,572,278 - -1.0
3,572,455 - CA264_15250 0.29 -1.0
3,572,455 - CA264_15250 0.29 +0.2
3,572,455 - CA264_15250 0.29 +0.2
3,572,620 - CA264_15250 0.53 +0.2
3,572,689 - CA264_15250 0.64 -0.6
3,572,803 - CA264_15250 0.81 -2.0
3,572,944 - +0.2
3,572,944 - +1.6
3,572,968 + -0.9
3,573,021 + CA264_15255 0.12 -1.6
3,573,021 + CA264_15255 0.12 -0.8
3,573,022 - CA264_15255 0.12 -0.4
3,573,025 + CA264_15255 0.13 -2.2
3,573,087 + CA264_15255 0.21 -1.4
3,573,088 - CA264_15255 0.21 -1.5
3,573,130 + CA264_15255 0.26 +0.4
3,573,131 - CA264_15255 0.26 -0.4
3,573,153 + CA264_15255 0.29 +0.7
3,573,154 - CA264_15255 0.29 +0.8
3,573,157 - CA264_15255 0.30 -3.3
3,573,157 - CA264_15255 0.30 +1.6
3,573,201 + CA264_15255 0.36 -1.1
3,573,226 + CA264_15255 0.39 -1.5
3,573,274 - CA264_15255 0.45 +0.2
3,573,274 - CA264_15255 0.45 -1.3
3,573,297 - CA264_15255 0.48 -0.8
3,573,584 - CA264_15255 0.85 -0.2
3,573,638 - -0.7
3,573,658 + -2.4
3,573,663 - +0.9
3,573,663 - -2.2
3,573,663 - +1.0
3,573,668 + -0.7
3,573,763 - -0.6
3,573,771 + +0.1
3,573,771 + -0.2
3,573,774 + +0.5
3,573,775 - +0.2
3,573,929 - CA264_15260 0.33 -0.1
3,574,269 - -1.3
3,574,269 - -0.6
3,574,283 + +0.2
3,574,284 - -0.8
3,574,287 + +0.4
3,574,288 - +0.2
3,574,331 - +0.5
3,574,334 + -1.2
3,574,394 - +1.8
3,574,394 - -0.2
3,574,481 + CA264_15265 0.10 -0.7
3,574,482 - CA264_15265 0.10 +0.2
3,574,482 - CA264_15265 0.10 +0.3
3,574,503 - CA264_15265 0.14 +0.1
3,574,503 - CA264_15265 0.14 +1.0
3,574,589 + CA264_15265 0.31 +0.4
3,574,589 + CA264_15265 0.31 -0.6
3,574,590 - CA264_15265 0.31 -0.3
3,574,633 + CA264_15265 0.39 -0.2
3,574,634 - CA264_15265 0.39 +0.8
3,574,634 - CA264_15265 0.39 +0.8
3,574,635 + CA264_15265 0.40 -1.2
3,574,636 - CA264_15265 0.40 -1.0
3,574,636 - CA264_15265 0.40 -0.6

Or see this region's nucleotide sequence