Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14300

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14295 and CA264_14300 are separated by 3 nucleotidesCA264_14300 and CA264_14305 are separated by 68 nucleotides CA264_14295: CA264_14295 - multidrug ABC transporter ATP-binding protein, at 3,355,732 to 3,356,643 _14295 CA264_14300: CA264_14300 - four helix bundle protein, at 3,356,647 to 3,357,006 _14300 CA264_14305: CA264_14305 - hypothetical protein, at 3,357,075 to 3,360,707 _14305 Position (kb) 3356 3357 3358Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3355.657 kb on - strandat 3355.688 kb on + strandat 3355.726 kb on - strandat 3355.739 kb on + strandat 3355.739 kb on + strandat 3355.740 kb on - strandat 3356.037 kb on + strand, within CA264_14295at 3356.038 kb on - strand, within CA264_14295at 3356.038 kb on - strand, within CA264_14295at 3356.038 kb on - strand, within CA264_14295at 3356.038 kb on - strand, within CA264_14295at 3356.050 kb on - strand, within CA264_14295at 3356.076 kb on - strand, within CA264_14295at 3356.104 kb on + strand, within CA264_14295at 3356.104 kb on + strand, within CA264_14295at 3356.197 kb on - strand, within CA264_14295at 3356.204 kb on + strand, within CA264_14295at 3356.353 kb on - strand, within CA264_14295at 3356.385 kb on + strand, within CA264_14295at 3356.386 kb on - strand, within CA264_14295at 3356.386 kb on - strand, within CA264_14295at 3356.386 kb on - strand, within CA264_14295at 3356.391 kb on - strand, within CA264_14295at 3356.507 kb on + strand, within CA264_14295at 3356.507 kb on + strand, within CA264_14295at 3356.507 kb on + strand, within CA264_14295at 3356.508 kb on - strand, within CA264_14295at 3356.508 kb on - strand, within CA264_14295at 3356.525 kb on + strand, within CA264_14295at 3356.574 kb on - strandat 3356.575 kb on + strandat 3356.576 kb on - strandat 3356.642 kb on - strandat 3356.656 kb on - strandat 3356.720 kb on + strand, within CA264_14300at 3356.748 kb on + strand, within CA264_14300at 3356.748 kb on + strand, within CA264_14300at 3356.749 kb on - strand, within CA264_14300at 3356.749 kb on - strand, within CA264_14300at 3356.754 kb on + strand, within CA264_14300at 3356.780 kb on + strand, within CA264_14300at 3356.812 kb on - strand, within CA264_14300at 3356.827 kb on - strand, within CA264_14300at 3356.864 kb on - strand, within CA264_14300at 3356.913 kb on + strand, within CA264_14300at 3357.006 kb on + strandat 3357.007 kb on - strandat 3357.007 kb on - strandat 3357.017 kb on - strandat 3357.062 kb on + strandat 3357.066 kb on + strandat 3357.088 kb on + strandat 3357.132 kb on + strandat 3357.133 kb on - strandat 3357.136 kb on + strandat 3357.136 kb on + strandat 3357.137 kb on - strandat 3357.137 kb on - strandat 3357.137 kb on - strandat 3357.137 kb on - strandat 3357.137 kb on - strandat 3357.138 kb on + strandat 3357.139 kb on - strandat 3357.139 kb on - strandat 3357.315 kb on - strandat 3357.315 kb on - strandat 3357.369 kb on + strandat 3357.370 kb on - strandat 3357.371 kb on + strandat 3357.371 kb on + strandat 3357.372 kb on - strandat 3357.372 kb on - strandat 3357.380 kb on + strandat 3357.380 kb on + strandat 3357.380 kb on + strandat 3357.381 kb on - strandat 3357.381 kb on - strandat 3357.432 kb on - strandat 3357.443 kb on + strand, within CA264_14305at 3357.443 kb on - strand, within CA264_14305at 3357.443 kb on - strand, within CA264_14305at 3357.447 kb on - strand, within CA264_14305at 3357.480 kb on - strand, within CA264_14305at 3357.481 kb on + strand, within CA264_14305at 3357.531 kb on + strand, within CA264_14305at 3357.547 kb on + strand, within CA264_14305at 3357.548 kb on - strand, within CA264_14305at 3357.630 kb on + strand, within CA264_14305at 3357.631 kb on - strand, within CA264_14305at 3357.660 kb on + strand, within CA264_14305at 3357.744 kb on + strand, within CA264_14305at 3357.839 kb on + strand, within CA264_14305at 3357.839 kb on + strand, within CA264_14305at 3357.839 kb on + strand, within CA264_14305at 3357.840 kb on - strand, within CA264_14305at 3357.840 kb on - strand, within CA264_14305at 3357.841 kb on + strand, within CA264_14305at 3357.894 kb on - strand, within CA264_14305at 3357.982 kb on + strand, within CA264_14305

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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3,355,657 - -1.4
3,355,688 + -1.0
3,355,726 - +0.6
3,355,739 + -0.4
3,355,739 + -2.5
3,355,740 - -0.5
3,356,037 + CA264_14295 0.33 -0.2
3,356,038 - CA264_14295 0.34 -1.0
3,356,038 - CA264_14295 0.34 -0.5
3,356,038 - CA264_14295 0.34 -0.3
3,356,038 - CA264_14295 0.34 -1.8
3,356,050 - CA264_14295 0.35 +0.1
3,356,076 - CA264_14295 0.38 -0.3
3,356,104 + CA264_14295 0.41 +1.8
3,356,104 + CA264_14295 0.41 -1.9
3,356,197 - CA264_14295 0.51 +0.0
3,356,204 + CA264_14295 0.52 -3.0
3,356,353 - CA264_14295 0.68 -0.5
3,356,385 + CA264_14295 0.72 -0.0
3,356,386 - CA264_14295 0.72 -0.3
3,356,386 - CA264_14295 0.72 -0.4
3,356,386 - CA264_14295 0.72 +0.1
3,356,391 - CA264_14295 0.72 +0.0
3,356,507 + CA264_14295 0.85 -1.5
3,356,507 + CA264_14295 0.85 +0.5
3,356,507 + CA264_14295 0.85 -0.0
3,356,508 - CA264_14295 0.85 -1.0
3,356,508 - CA264_14295 0.85 -1.0
3,356,525 + CA264_14295 0.87 -0.4
3,356,574 - -1.0
3,356,575 + -1.6
3,356,576 - -0.4
3,356,642 - -1.6
3,356,656 - +0.7
3,356,720 + CA264_14300 0.20 -1.7
3,356,748 + CA264_14300 0.28 -2.2
3,356,748 + CA264_14300 0.28 -2.6
3,356,749 - CA264_14300 0.28 +1.1
3,356,749 - CA264_14300 0.28 +0.9
3,356,754 + CA264_14300 0.30 -1.2
3,356,780 + CA264_14300 0.37 -1.2
3,356,812 - CA264_14300 0.46 -1.5
3,356,827 - CA264_14300 0.50 -1.5
3,356,864 - CA264_14300 0.60 -0.4
3,356,913 + CA264_14300 0.74 -1.6
3,357,006 + -1.9
3,357,007 - -0.7
3,357,007 - -0.2
3,357,017 - -2.5
3,357,062 + -1.1
3,357,066 + -0.7
3,357,088 + -0.8
3,357,132 + -0.0
3,357,133 - -0.1
3,357,136 + +0.3
3,357,136 + -0.8
3,357,137 - -0.3
3,357,137 - -0.1
3,357,137 - +0.9
3,357,137 - -0.8
3,357,137 - -0.8
3,357,138 + +0.7
3,357,139 - -0.8
3,357,139 - +0.3
3,357,315 - -0.4
3,357,315 - -0.4
3,357,369 + +0.3
3,357,370 - +0.4
3,357,371 + -0.9
3,357,371 + -0.6
3,357,372 - -0.4
3,357,372 - -0.2
3,357,380 + +0.1
3,357,380 + -0.6
3,357,380 + +0.5
3,357,381 - +0.6
3,357,381 - +0.5
3,357,432 - -1.0
3,357,443 + CA264_14305 0.10 +0.6
3,357,443 - CA264_14305 0.10 -0.8
3,357,443 - CA264_14305 0.10 +1.3
3,357,447 - CA264_14305 0.10 -2.2
3,357,480 - CA264_14305 0.11 -0.5
3,357,481 + CA264_14305 0.11 -0.1
3,357,531 + CA264_14305 0.13 +0.1
3,357,547 + CA264_14305 0.13 +0.7
3,357,548 - CA264_14305 0.13 -0.3
3,357,630 + CA264_14305 0.15 +0.5
3,357,631 - CA264_14305 0.15 +0.9
3,357,660 + CA264_14305 0.16 +1.3
3,357,744 + CA264_14305 0.18 -0.4
3,357,839 + CA264_14305 0.21 -0.1
3,357,839 + CA264_14305 0.21 +0.9
3,357,839 + CA264_14305 0.21 -0.1
3,357,840 - CA264_14305 0.21 -0.2
3,357,840 - CA264_14305 0.21 -0.2
3,357,841 + CA264_14305 0.21 +0.8
3,357,894 - CA264_14305 0.23 +1.0
3,357,982 + CA264_14305 0.25 -1.7

Or see this region's nucleotide sequence