Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13810

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13805 and CA264_13810 are separated by 150 nucleotidesCA264_13810 and CA264_13815 are separated by 65 nucleotides CA264_13805: CA264_13805 - sialate O-acetylesterase, at 3,226,195 to 3,228,159 _13805 CA264_13810: CA264_13810 - hypothetical protein, at 3,228,310 to 3,229,764 _13810 CA264_13815: CA264_13815 - hypothetical protein, at 3,229,830 to 3,231,680 _13815 Position (kb) 3228 3229 3230Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3227.323 kb on + strand, within CA264_13805at 3227.374 kb on + strand, within CA264_13805at 3227.375 kb on - strand, within CA264_13805at 3227.391 kb on + strand, within CA264_13805at 3227.443 kb on + strand, within CA264_13805at 3227.444 kb on - strand, within CA264_13805at 3227.473 kb on + strand, within CA264_13805at 3227.473 kb on + strand, within CA264_13805at 3227.474 kb on - strand, within CA264_13805at 3227.482 kb on - strand, within CA264_13805at 3227.482 kb on - strand, within CA264_13805at 3227.492 kb on + strand, within CA264_13805at 3227.493 kb on - strand, within CA264_13805at 3227.623 kb on + strand, within CA264_13805at 3227.623 kb on + strand, within CA264_13805at 3227.726 kb on + strand, within CA264_13805at 3227.726 kb on + strand, within CA264_13805at 3227.726 kb on + strand, within CA264_13805at 3227.750 kb on + strand, within CA264_13805at 3227.750 kb on + strand, within CA264_13805at 3227.750 kb on + strand, within CA264_13805at 3227.949 kb on - strand, within CA264_13805at 3228.005 kb on + strandat 3228.086 kb on - strandat 3228.086 kb on - strandat 3228.282 kb on - strandat 3228.518 kb on + strand, within CA264_13810at 3228.519 kb on - strand, within CA264_13810at 3228.519 kb on - strand, within CA264_13810at 3228.522 kb on + strand, within CA264_13810at 3228.522 kb on + strand, within CA264_13810at 3228.522 kb on + strand, within CA264_13810at 3228.523 kb on - strand, within CA264_13810at 3228.523 kb on - strand, within CA264_13810at 3228.523 kb on - strand, within CA264_13810at 3228.523 kb on - strand, within CA264_13810at 3228.560 kb on + strand, within CA264_13810at 3228.733 kb on + strand, within CA264_13810at 3228.733 kb on + strand, within CA264_13810at 3228.904 kb on - strand, within CA264_13810at 3228.924 kb on - strand, within CA264_13810at 3228.953 kb on + strand, within CA264_13810at 3228.954 kb on - strand, within CA264_13810at 3229.220 kb on + strand, within CA264_13810at 3229.220 kb on + strand, within CA264_13810at 3229.220 kb on + strand, within CA264_13810at 3229.220 kb on + strand, within CA264_13810at 3229.221 kb on - strand, within CA264_13810at 3229.288 kb on - strand, within CA264_13810at 3229.414 kb on + strand, within CA264_13810at 3229.474 kb on + strand, within CA264_13810at 3229.474 kb on + strand, within CA264_13810at 3229.557 kb on + strand, within CA264_13810at 3229.589 kb on + strand, within CA264_13810at 3229.699 kb on - strandat 3229.699 kb on - strandat 3229.719 kb on - strandat 3229.763 kb on - strandat 3229.808 kb on + strandat 3229.814 kb on + strandat 3230.265 kb on + strand, within CA264_13815at 3230.400 kb on - strand, within CA264_13815at 3230.408 kb on - strand, within CA264_13815at 3230.522 kb on - strand, within CA264_13815at 3230.522 kb on - strand, within CA264_13815at 3230.623 kb on - strand, within CA264_13815at 3230.623 kb on - strand, within CA264_13815at 3230.713 kb on - strand, within CA264_13815

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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3,227,323 + CA264_13805 0.57 +0.2
3,227,374 + CA264_13805 0.60 -0.2
3,227,375 - CA264_13805 0.60 -0.2
3,227,391 + CA264_13805 0.61 -0.6
3,227,443 + CA264_13805 0.64 -0.0
3,227,444 - CA264_13805 0.64 +0.3
3,227,473 + CA264_13805 0.65 +0.5
3,227,473 + CA264_13805 0.65 -1.3
3,227,474 - CA264_13805 0.65 +1.1
3,227,482 - CA264_13805 0.65 +0.2
3,227,482 - CA264_13805 0.65 -0.2
3,227,492 + CA264_13805 0.66 -0.1
3,227,493 - CA264_13805 0.66 -0.7
3,227,623 + CA264_13805 0.73 +0.4
3,227,623 + CA264_13805 0.73 +0.0
3,227,726 + CA264_13805 0.78 -0.5
3,227,726 + CA264_13805 0.78 -0.9
3,227,726 + CA264_13805 0.78 -0.2
3,227,750 + CA264_13805 0.79 +1.1
3,227,750 + CA264_13805 0.79 +0.3
3,227,750 + CA264_13805 0.79 -0.0
3,227,949 - CA264_13805 0.89 +0.1
3,228,005 + +0.5
3,228,086 - -0.8
3,228,086 - +0.7
3,228,282 - +1.0
3,228,518 + CA264_13810 0.14 +0.4
3,228,519 - CA264_13810 0.14 +0.5
3,228,519 - CA264_13810 0.14 +2.8
3,228,522 + CA264_13810 0.15 +1.4
3,228,522 + CA264_13810 0.15 +0.2
3,228,522 + CA264_13810 0.15 -2.2
3,228,523 - CA264_13810 0.15 -0.6
3,228,523 - CA264_13810 0.15 +1.3
3,228,523 - CA264_13810 0.15 -0.1
3,228,523 - CA264_13810 0.15 +1.2
3,228,560 + CA264_13810 0.17 +1.3
3,228,733 + CA264_13810 0.29 +1.8
3,228,733 + CA264_13810 0.29 -0.3
3,228,904 - CA264_13810 0.41 +0.3
3,228,924 - CA264_13810 0.42 -0.2
3,228,953 + CA264_13810 0.44 +0.1
3,228,954 - CA264_13810 0.44 +0.1
3,229,220 + CA264_13810 0.63 +0.4
3,229,220 + CA264_13810 0.63 -0.5
3,229,220 + CA264_13810 0.63 -0.5
3,229,220 + CA264_13810 0.63 +0.1
3,229,221 - CA264_13810 0.63 -0.8
3,229,288 - CA264_13810 0.67 -0.9
3,229,414 + CA264_13810 0.76 +0.1
3,229,474 + CA264_13810 0.80 +1.4
3,229,474 + CA264_13810 0.80 +0.2
3,229,557 + CA264_13810 0.86 -0.5
3,229,589 + CA264_13810 0.88 +0.1
3,229,699 - +0.7
3,229,699 - +0.6
3,229,719 - -0.0
3,229,763 - +0.5
3,229,808 + +0.7
3,229,814 + -0.3
3,230,265 + CA264_13815 0.24 -0.1
3,230,400 - CA264_13815 0.31 +0.1
3,230,408 - CA264_13815 0.31 +0.5
3,230,522 - CA264_13815 0.37 -0.2
3,230,522 - CA264_13815 0.37 +0.2
3,230,623 - CA264_13815 0.43 +0.3
3,230,623 - CA264_13815 0.43 -0.1
3,230,713 - CA264_13815 0.48 +0.1

Or see this region's nucleotide sequence