Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13605

Experiment: m.b. Nickel (II) chloride 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_13600 and CA264_13605 are separated by 311 nucleotidesCA264_13605 and CA264_13610 are separated by 78 nucleotides CA264_13600: CA264_13600 - SusC/RagA family TonB-linked outer membrane protein, at 3,177,137 to 3,180,277 _13600 CA264_13605: CA264_13605 - hypothetical protein, at 3,180,589 to 3,181,413 _13605 CA264_13610: CA264_13610 - sodium:proton antiporter, at 3,181,492 to 3,182,739 _13610 Position (kb) 3180 3181 3182Strain fitness (log2 ratio) -2 -1 0 1 2at 3179.708 kb on + strand, within CA264_13600at 3179.772 kb on - strand, within CA264_13600at 3179.775 kb on - strand, within CA264_13600at 3179.775 kb on - strand, within CA264_13600at 3179.775 kb on - strand, within CA264_13600at 3179.852 kb on + strand, within CA264_13600at 3179.936 kb on - strand, within CA264_13600at 3179.999 kb on + strandat 3180.000 kb on - strandat 3180.005 kb on - strandat 3180.088 kb on + strandat 3180.088 kb on + strandat 3180.088 kb on + strandat 3180.093 kb on + strandat 3180.094 kb on - strandat 3180.094 kb on - strandat 3180.122 kb on + strandat 3180.122 kb on + strandat 3180.122 kb on + strandat 3180.122 kb on + strandat 3180.123 kb on - strandat 3180.138 kb on - strandat 3180.185 kb on + strandat 3180.237 kb on - strandat 3180.263 kb on + strandat 3180.290 kb on - strandat 3180.690 kb on + strand, within CA264_13605at 3180.690 kb on + strand, within CA264_13605at 3180.865 kb on + strand, within CA264_13605at 3180.865 kb on + strand, within CA264_13605at 3180.865 kb on + strand, within CA264_13605at 3180.866 kb on - strand, within CA264_13605at 3180.866 kb on - strand, within CA264_13605at 3180.873 kb on + strand, within CA264_13605at 3181.059 kb on - strand, within CA264_13605at 3181.078 kb on + strand, within CA264_13605at 3181.078 kb on + strand, within CA264_13605at 3181.109 kb on - strand, within CA264_13605at 3181.149 kb on - strand, within CA264_13605at 3181.153 kb on + strand, within CA264_13605at 3181.238 kb on - strand, within CA264_13605at 3181.239 kb on + strand, within CA264_13605at 3181.288 kb on - strand, within CA264_13605at 3181.293 kb on + strand, within CA264_13605at 3181.412 kb on - strandat 3181.463 kb on + strandat 3181.539 kb on + strandat 3181.539 kb on + strandat 3181.571 kb on - strandat 3181.571 kb on - strandat 3181.604 kb on + strandat 3181.604 kb on + strandat 3181.638 kb on + strand, within CA264_13610at 3181.674 kb on + strand, within CA264_13610at 3181.674 kb on + strand, within CA264_13610at 3181.674 kb on + strand, within CA264_13610at 3181.675 kb on - strand, within CA264_13610at 3181.719 kb on - strand, within CA264_13610at 3181.739 kb on - strand, within CA264_13610at 3181.742 kb on + strand, within CA264_13610at 3181.743 kb on - strand, within CA264_13610at 3181.753 kb on + strand, within CA264_13610at 3181.754 kb on - strand, within CA264_13610at 3181.771 kb on - strand, within CA264_13610at 3181.771 kb on - strand, within CA264_13610at 3181.771 kb on - strand, within CA264_13610at 3181.790 kb on + strand, within CA264_13610at 3181.790 kb on + strand, within CA264_13610at 3181.791 kb on - strand, within CA264_13610at 3181.801 kb on - strand, within CA264_13610at 3181.890 kb on - strand, within CA264_13610at 3181.939 kb on - strand, within CA264_13610at 3182.053 kb on + strand, within CA264_13610at 3182.053 kb on + strand, within CA264_13610at 3182.196 kb on + strand, within CA264_13610at 3182.196 kb on + strand, within CA264_13610at 3182.310 kb on + strand, within CA264_13610at 3182.320 kb on - strand, within CA264_13610at 3182.342 kb on + strand, within CA264_13610at 3182.342 kb on + strand, within CA264_13610at 3182.342 kb on + strand, within CA264_13610at 3182.342 kb on + strand, within CA264_13610at 3182.360 kb on + strand, within CA264_13610at 3182.382 kb on - strand, within CA264_13610at 3182.384 kb on + strand, within CA264_13610at 3182.410 kb on - strand, within CA264_13610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
remove
3,179,708 + CA264_13600 0.82 -0.3
3,179,772 - CA264_13600 0.84 +0.0
3,179,775 - CA264_13600 0.84 +0.1
3,179,775 - CA264_13600 0.84 +0.2
3,179,775 - CA264_13600 0.84 -0.9
3,179,852 + CA264_13600 0.86 -0.4
3,179,936 - CA264_13600 0.89 +0.6
3,179,999 + +0.8
3,180,000 - -0.9
3,180,005 - +0.8
3,180,088 + +0.2
3,180,088 + -1.2
3,180,088 + -0.4
3,180,093 + +0.8
3,180,094 - -0.7
3,180,094 - -0.3
3,180,122 + -0.1
3,180,122 + +1.3
3,180,122 + -0.4
3,180,122 + -0.3
3,180,123 - +0.0
3,180,138 - -0.2
3,180,185 + +0.2
3,180,237 - -0.5
3,180,263 + -1.2
3,180,290 - +0.9
3,180,690 + CA264_13605 0.12 -1.0
3,180,690 + CA264_13605 0.12 -1.9
3,180,865 + CA264_13605 0.33 -0.2
3,180,865 + CA264_13605 0.33 +0.7
3,180,865 + CA264_13605 0.33 +0.1
3,180,866 - CA264_13605 0.34 +0.4
3,180,866 - CA264_13605 0.34 +0.4
3,180,873 + CA264_13605 0.34 +0.6
3,181,059 - CA264_13605 0.57 -0.3
3,181,078 + CA264_13605 0.59 +0.9
3,181,078 + CA264_13605 0.59 +1.1
3,181,109 - CA264_13605 0.63 +0.2
3,181,149 - CA264_13605 0.68 +0.4
3,181,153 + CA264_13605 0.68 +0.4
3,181,238 - CA264_13605 0.79 +1.8
3,181,239 + CA264_13605 0.79 -0.4
3,181,288 - CA264_13605 0.85 +0.9
3,181,293 + CA264_13605 0.85 -0.2
3,181,412 - -0.7
3,181,463 + +0.6
3,181,539 + -0.2
3,181,539 + +0.9
3,181,571 - -0.4
3,181,571 - +1.0
3,181,604 + +0.4
3,181,604 + -1.0
3,181,638 + CA264_13610 0.12 +0.4
3,181,674 + CA264_13610 0.15 +0.7
3,181,674 + CA264_13610 0.15 +0.0
3,181,674 + CA264_13610 0.15 -1.7
3,181,675 - CA264_13610 0.15 -1.5
3,181,719 - CA264_13610 0.18 +0.8
3,181,739 - CA264_13610 0.20 -0.9
3,181,742 + CA264_13610 0.20 +0.8
3,181,743 - CA264_13610 0.20 -0.0
3,181,753 + CA264_13610 0.21 -1.0
3,181,754 - CA264_13610 0.21 +0.9
3,181,771 - CA264_13610 0.22 -0.5
3,181,771 - CA264_13610 0.22 -0.6
3,181,771 - CA264_13610 0.22 +0.6
3,181,790 + CA264_13610 0.24 +0.4
3,181,790 + CA264_13610 0.24 -0.4
3,181,791 - CA264_13610 0.24 -0.2
3,181,801 - CA264_13610 0.25 -0.4
3,181,890 - CA264_13610 0.32 +0.1
3,181,939 - CA264_13610 0.36 -0.1
3,182,053 + CA264_13610 0.45 +1.0
3,182,053 + CA264_13610 0.45 -1.0
3,182,196 + CA264_13610 0.56 +2.2
3,182,196 + CA264_13610 0.56 -1.2
3,182,310 + CA264_13610 0.66 +0.3
3,182,320 - CA264_13610 0.66 -0.3
3,182,342 + CA264_13610 0.68 -0.2
3,182,342 + CA264_13610 0.68 +1.2
3,182,342 + CA264_13610 0.68 +0.1
3,182,342 + CA264_13610 0.68 +0.1
3,182,360 + CA264_13610 0.70 +0.3
3,182,382 - CA264_13610 0.71 -0.2
3,182,384 + CA264_13610 0.71 -0.7
3,182,410 - CA264_13610 0.74 -1.6

Or see this region's nucleotide sequence