Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10040

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10025 and CA264_10030 are separated by 38 nucleotidesCA264_10030 and CA264_10035 are separated by 92 nucleotidesCA264_10035 and CA264_10040 are separated by 16 nucleotidesCA264_10040 and CA264_10045 are separated by 82 nucleotidesCA264_10045 and CA264_10050 are separated by 420 nucleotides CA264_10025: CA264_10025 - hypothetical protein, at 2,330,043 to 2,330,942 _10025 CA264_10030: CA264_10030 - hypothetical protein, at 2,330,981 to 2,331,196 _10030 CA264_10035: CA264_10035 - hypothetical protein, at 2,331,289 to 2,331,696 _10035 CA264_10040: CA264_10040 - 5-hydroxyisourate hydrolase, at 2,331,713 to 2,332,120 _10040 CA264_10045: CA264_10045 - hypothetical protein, at 2,332,203 to 2,332,505 _10045 CA264_10050: CA264_10050 - hypothetical protein, at 2,332,926 to 2,333,354 _10050 Position (kb) 2331 2332 2333Strain fitness (log2 ratio) -2 -1 0 1 2at 2330.762 kb on - strand, within CA264_10025at 2330.774 kb on - strand, within CA264_10025at 2330.859 kb on + strandat 2330.877 kb on + strandat 2330.931 kb on + strandat 2330.956 kb on + strandat 2330.957 kb on - strandat 2330.973 kb on - strandat 2330.977 kb on - strandat 2330.994 kb on - strandat 2330.994 kb on - strandat 2331.029 kb on - strand, within CA264_10030at 2331.029 kb on - strand, within CA264_10030at 2331.034 kb on - strand, within CA264_10030at 2331.035 kb on + strand, within CA264_10030at 2331.036 kb on - strand, within CA264_10030at 2331.038 kb on + strand, within CA264_10030at 2331.038 kb on + strand, within CA264_10030at 2331.038 kb on + strand, within CA264_10030at 2331.038 kb on + strand, within CA264_10030at 2331.038 kb on + strand, within CA264_10030at 2331.039 kb on - strand, within CA264_10030at 2331.043 kb on + strand, within CA264_10030at 2331.049 kb on + strand, within CA264_10030at 2331.065 kb on - strand, within CA264_10030at 2331.086 kb on + strand, within CA264_10030at 2331.086 kb on + strand, within CA264_10030at 2331.087 kb on - strand, within CA264_10030at 2331.123 kb on - strand, within CA264_10030at 2331.127 kb on - strand, within CA264_10030at 2331.145 kb on + strand, within CA264_10030at 2331.191 kb on - strandat 2331.231 kb on + strandat 2331.327 kb on - strandat 2331.345 kb on + strand, within CA264_10035at 2331.427 kb on + strand, within CA264_10035at 2331.455 kb on + strand, within CA264_10035at 2331.684 kb on - strandat 2331.688 kb on - strandat 2331.688 kb on - strandat 2331.688 kb on - strandat 2331.962 kb on + strand, within CA264_10040at 2331.981 kb on + strand, within CA264_10040at 2332.230 kb on + strandat 2332.440 kb on + strand, within CA264_10045at 2332.440 kb on + strand, within CA264_10045at 2332.878 kb on + strandat 2332.878 kb on + strandat 2332.881 kb on + strandat 2332.881 kb on + strandat 2332.897 kb on - strandat 2332.901 kb on - strandat 2332.925 kb on + strandat 2332.926 kb on - strandat 2333.064 kb on - strand, within CA264_10050at 2333.064 kb on - strand, within CA264_10050at 2333.069 kb on - strand, within CA264_10050at 2333.069 kb on - strand, within CA264_10050

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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2,330,762 - CA264_10025 0.80 +0.2
2,330,774 - CA264_10025 0.81 +1.1
2,330,859 + +0.2
2,330,877 + +0.9
2,330,931 + -0.1
2,330,956 + -1.4
2,330,957 - +0.1
2,330,973 - +0.2
2,330,977 - -1.7
2,330,994 - +1.3
2,330,994 - +0.3
2,331,029 - CA264_10030 0.22 -0.7
2,331,029 - CA264_10030 0.22 -0.3
2,331,034 - CA264_10030 0.25 -0.7
2,331,035 + CA264_10030 0.25 -0.3
2,331,036 - CA264_10030 0.25 -1.4
2,331,038 + CA264_10030 0.26 -2.2
2,331,038 + CA264_10030 0.26 -0.6
2,331,038 + CA264_10030 0.26 +0.7
2,331,038 + CA264_10030 0.26 -0.8
2,331,038 + CA264_10030 0.26 +0.1
2,331,039 - CA264_10030 0.27 -1.4
2,331,043 + CA264_10030 0.29 -0.4
2,331,049 + CA264_10030 0.31 -1.1
2,331,065 - CA264_10030 0.39 -0.7
2,331,086 + CA264_10030 0.49 +0.7
2,331,086 + CA264_10030 0.49 -1.1
2,331,087 - CA264_10030 0.49 +0.3
2,331,123 - CA264_10030 0.66 +0.3
2,331,127 - CA264_10030 0.68 +0.9
2,331,145 + CA264_10030 0.76 +0.7
2,331,191 - -0.6
2,331,231 + -1.3
2,331,327 - +0.4
2,331,345 + CA264_10035 0.14 +0.3
2,331,427 + CA264_10035 0.34 -0.5
2,331,455 + CA264_10035 0.41 -0.2
2,331,684 - -0.4
2,331,688 - +1.1
2,331,688 - -0.2
2,331,688 - -0.6
2,331,962 + CA264_10040 0.61 -0.4
2,331,981 + CA264_10040 0.66 +1.8
2,332,230 + -1.3
2,332,440 + CA264_10045 0.78 -0.3
2,332,440 + CA264_10045 0.78 +0.6
2,332,878 + -1.3
2,332,878 + -0.6
2,332,881 + -1.5
2,332,881 + -1.0
2,332,897 - -0.4
2,332,901 - +0.0
2,332,925 + -1.4
2,332,926 - -1.3
2,333,064 - CA264_10050 0.32 +0.3
2,333,064 - CA264_10050 0.32 +1.3
2,333,069 - CA264_10050 0.33 -0.8
2,333,069 - CA264_10050 0.33 -0.1

Or see this region's nucleotide sequence