Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09735

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09725 and CA264_09730 are separated by 62 nucleotidesCA264_09730 and CA264_09735 are separated by 16 nucleotidesCA264_09735 and CA264_09740 are separated by 611 nucleotides CA264_09725: CA264_09725 - cAMP-binding protein, at 2,259,415 to 2,259,984 _09725 CA264_09730: CA264_09730 - hypothetical protein, at 2,260,047 to 2,260,592 _09730 CA264_09735: CA264_09735 - 5-hydroxyisourate hydrolase, at 2,260,609 to 2,261,016 _09735 CA264_09740: CA264_09740 - hypothetical protein, at 2,261,628 to 2,262,092 _09740 Position (kb) 2260 2261 2262Strain fitness (log2 ratio) -2 -1 0 1 2at 2259.695 kb on - strand, within CA264_09725at 2259.767 kb on + strand, within CA264_09725at 2259.785 kb on + strand, within CA264_09725at 2259.786 kb on - strand, within CA264_09725at 2259.955 kb on - strandat 2259.955 kb on - strandat 2259.959 kb on + strandat 2259.959 kb on + strandat 2259.996 kb on + strandat 2260.027 kb on - strandat 2260.027 kb on - strandat 2260.083 kb on - strandat 2260.174 kb on + strand, within CA264_09730at 2260.205 kb on - strand, within CA264_09730at 2260.211 kb on - strand, within CA264_09730at 2260.217 kb on + strand, within CA264_09730at 2260.292 kb on + strand, within CA264_09730at 2260.354 kb on - strand, within CA264_09730at 2260.354 kb on - strand, within CA264_09730at 2260.354 kb on - strand, within CA264_09730at 2260.580 kb on - strandat 2260.580 kb on - strandat 2260.580 kb on - strandat 2260.584 kb on - strandat 2260.584 kb on - strandat 2260.584 kb on - strandat 2260.584 kb on - strandat 2260.584 kb on - strandat 2260.626 kb on - strandat 2260.626 kb on - strandat 2260.945 kb on - strand, within CA264_09735at 2260.961 kb on - strand, within CA264_09735at 2261.201 kb on + strandat 2261.336 kb on + strandat 2261.336 kb on + strandat 2261.436 kb on + strandat 2261.502 kb on - strandat 2261.514 kb on + strandat 2261.514 kb on + strandat 2261.534 kb on + strandat 2261.563 kb on - strandat 2261.669 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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2,259,695 - CA264_09725 0.49 -1.6
2,259,767 + CA264_09725 0.62 -1.3
2,259,785 + CA264_09725 0.65 -1.2
2,259,786 - CA264_09725 0.65 -0.1
2,259,955 - -1.1
2,259,955 - -0.2
2,259,959 + -0.1
2,259,959 + -0.1
2,259,996 + -0.8
2,260,027 - -0.7
2,260,027 - +0.0
2,260,083 - +0.0
2,260,174 + CA264_09730 0.23 -0.1
2,260,205 - CA264_09730 0.29 +1.0
2,260,211 - CA264_09730 0.30 -1.1
2,260,217 + CA264_09730 0.31 -0.6
2,260,292 + CA264_09730 0.45 -0.3
2,260,354 - CA264_09730 0.56 +0.8
2,260,354 - CA264_09730 0.56 -0.2
2,260,354 - CA264_09730 0.56 +1.8
2,260,580 - +0.8
2,260,580 - +0.2
2,260,580 - -0.6
2,260,584 - -0.2
2,260,584 - +0.2
2,260,584 - +0.7
2,260,584 - -0.9
2,260,584 - -0.3
2,260,626 - +0.5
2,260,626 - -0.1
2,260,945 - CA264_09735 0.82 +0.2
2,260,961 - CA264_09735 0.86 -1.3
2,261,201 + -0.2
2,261,336 + -0.0
2,261,336 + -0.7
2,261,436 + -0.4
2,261,502 - -1.7
2,261,514 + -0.3
2,261,514 + -1.1
2,261,534 + -1.3
2,261,563 - -1.8
2,261,669 + -0.7

Or see this region's nucleotide sequence