Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08115

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08105 and CA264_08110 are separated by 114 nucleotidesCA264_08110 and CA264_08115 are separated by 18 nucleotidesCA264_08115 and CA264_08120 are separated by 3 nucleotidesCA264_08120 and CA264_08125 are separated by 67 nucleotides CA264_08105: CA264_08105 - NupC/NupG family nucleoside CNT transporter, at 1,870,580 to 1,871,881 _08105 CA264_08110: CA264_08110 - hypothetical protein, at 1,871,996 to 1,872,601 _08110 CA264_08115: CA264_08115 - electron transfer flavoprotein subunit alpha, at 1,872,620 to 1,873,597 _08115 CA264_08120: CA264_08120 - electron transfer flavoprotein subunit alpha, at 1,873,601 to 1,874,341 _08120 CA264_08125: CA264_08125 - tetratricopeptide repeat protein, at 1,874,409 to 1,874,741 _08125 Position (kb) 1872 1873 1874Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1871.878 kb on - strandat 1871.884 kb on + strandat 1871.884 kb on + strandat 1871.884 kb on + strandat 1871.885 kb on - strandat 1871.885 kb on - strandat 1871.885 kb on - strandat 1871.885 kb on - strandat 1871.885 kb on - strandat 1871.982 kb on + strandat 1871.983 kb on - strandat 1872.042 kb on + strandat 1872.131 kb on - strand, within CA264_08110at 1872.196 kb on + strand, within CA264_08110at 1872.196 kb on + strand, within CA264_08110at 1872.201 kb on - strand, within CA264_08110at 1872.203 kb on - strand, within CA264_08110at 1872.230 kb on + strand, within CA264_08110at 1872.237 kb on + strand, within CA264_08110at 1872.237 kb on + strand, within CA264_08110at 1872.237 kb on + strand, within CA264_08110at 1872.238 kb on - strand, within CA264_08110at 1872.241 kb on + strand, within CA264_08110at 1872.336 kb on + strand, within CA264_08110at 1872.383 kb on + strand, within CA264_08110at 1872.384 kb on - strand, within CA264_08110at 1872.410 kb on - strand, within CA264_08110at 1872.443 kb on + strand, within CA264_08110at 1872.614 kb on + strandat 1872.621 kb on + strandat 1872.629 kb on + strandat 1872.730 kb on + strand, within CA264_08115at 1872.790 kb on + strand, within CA264_08115at 1872.791 kb on - strand, within CA264_08115at 1872.794 kb on + strand, within CA264_08115at 1872.804 kb on + strand, within CA264_08115at 1872.805 kb on - strand, within CA264_08115at 1872.805 kb on - strand, within CA264_08115at 1872.805 kb on - strand, within CA264_08115at 1872.824 kb on - strand, within CA264_08115at 1872.827 kb on - strand, within CA264_08115at 1873.246 kb on + strand, within CA264_08115at 1873.246 kb on + strand, within CA264_08115at 1873.247 kb on - strand, within CA264_08115at 1873.282 kb on + strand, within CA264_08115at 1873.347 kb on - strand, within CA264_08115at 1873.583 kb on + strandat 1873.586 kb on + strandat 1873.589 kb on + strandat 1873.598 kb on - strandat 1873.598 kb on - strandat 1873.598 kb on - strandat 1873.598 kb on - strandat 1873.602 kb on + strandat 1873.602 kb on + strandat 1873.612 kb on + strandat 1873.612 kb on + strandat 1873.628 kb on + strandat 1873.633 kb on + strandat 1873.634 kb on - strandat 1873.699 kb on - strand, within CA264_08120at 1873.703 kb on + strand, within CA264_08120at 1873.704 kb on - strand, within CA264_08120at 1873.708 kb on - strand, within CA264_08120at 1873.894 kb on + strand, within CA264_08120at 1873.964 kb on - strand, within CA264_08120at 1874.015 kb on - strand, within CA264_08120at 1874.019 kb on + strand, within CA264_08120at 1874.019 kb on + strand, within CA264_08120at 1874.020 kb on - strand, within CA264_08120at 1874.044 kb on + strand, within CA264_08120at 1874.162 kb on + strand, within CA264_08120at 1874.166 kb on - strand, within CA264_08120at 1874.240 kb on + strand, within CA264_08120at 1874.241 kb on - strand, within CA264_08120at 1874.285 kb on - strandat 1874.346 kb on - strandat 1874.368 kb on + strandat 1874.390 kb on - strandat 1874.426 kb on - strandat 1874.476 kb on + strand, within CA264_08125at 1874.477 kb on - strand, within CA264_08125at 1874.479 kb on - strand, within CA264_08125at 1874.496 kb on + strand, within CA264_08125at 1874.563 kb on - strand, within CA264_08125at 1874.566 kb on + strand, within CA264_08125at 1874.575 kb on - strand, within CA264_08125at 1874.577 kb on + strand, within CA264_08125at 1874.577 kb on + strand, within CA264_08125at 1874.577 kb on + strand, within CA264_08125at 1874.593 kb on + strand, within CA264_08125at 1874.594 kb on - strand, within CA264_08125

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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1,871,878 - +1.2
1,871,884 + -1.5
1,871,884 + -0.7
1,871,884 + +0.5
1,871,885 - -0.3
1,871,885 - -1.0
1,871,885 - -0.1
1,871,885 - -0.2
1,871,885 - +0.6
1,871,982 + -0.3
1,871,983 - -1.9
1,872,042 + -0.9
1,872,131 - CA264_08110 0.22 +0.3
1,872,196 + CA264_08110 0.33 -1.5
1,872,196 + CA264_08110 0.33 +1.5
1,872,201 - CA264_08110 0.34 -0.9
1,872,203 - CA264_08110 0.34 +2.1
1,872,230 + CA264_08110 0.39 +0.1
1,872,237 + CA264_08110 0.40 +1.7
1,872,237 + CA264_08110 0.40 -0.6
1,872,237 + CA264_08110 0.40 -0.1
1,872,238 - CA264_08110 0.40 -0.9
1,872,241 + CA264_08110 0.40 +0.5
1,872,336 + CA264_08110 0.56 -0.2
1,872,383 + CA264_08110 0.64 -1.7
1,872,384 - CA264_08110 0.64 -0.7
1,872,410 - CA264_08110 0.68 -0.1
1,872,443 + CA264_08110 0.74 -0.7
1,872,614 + -0.4
1,872,621 + +0.1
1,872,629 + -0.7
1,872,730 + CA264_08115 0.11 -1.2
1,872,790 + CA264_08115 0.17 -0.6
1,872,791 - CA264_08115 0.17 +0.1
1,872,794 + CA264_08115 0.18 -1.6
1,872,804 + CA264_08115 0.19 -1.8
1,872,805 - CA264_08115 0.19 -1.6
1,872,805 - CA264_08115 0.19 -1.5
1,872,805 - CA264_08115 0.19 -0.5
1,872,824 - CA264_08115 0.21 -1.6
1,872,827 - CA264_08115 0.21 -0.7
1,873,246 + CA264_08115 0.64 +0.3
1,873,246 + CA264_08115 0.64 +2.1
1,873,247 - CA264_08115 0.64 -0.6
1,873,282 + CA264_08115 0.68 -0.5
1,873,347 - CA264_08115 0.74 +1.1
1,873,583 + -0.4
1,873,586 + +0.2
1,873,589 + -0.2
1,873,598 - -0.8
1,873,598 - -1.3
1,873,598 - -0.7
1,873,598 - -0.8
1,873,602 + -0.6
1,873,602 + -0.8
1,873,612 + -0.7
1,873,612 + -0.1
1,873,628 + -0.3
1,873,633 + -0.0
1,873,634 - -0.1
1,873,699 - CA264_08120 0.13 -1.3
1,873,703 + CA264_08120 0.14 -2.3
1,873,704 - CA264_08120 0.14 -0.8
1,873,708 - CA264_08120 0.14 -1.3
1,873,894 + CA264_08120 0.40 -2.3
1,873,964 - CA264_08120 0.49 -0.3
1,874,015 - CA264_08120 0.56 -0.7
1,874,019 + CA264_08120 0.56 -0.9
1,874,019 + CA264_08120 0.56 -1.4
1,874,020 - CA264_08120 0.57 -0.4
1,874,044 + CA264_08120 0.60 -1.0
1,874,162 + CA264_08120 0.76 -1.8
1,874,166 - CA264_08120 0.76 -2.9
1,874,240 + CA264_08120 0.86 -0.7
1,874,241 - CA264_08120 0.86 -2.1
1,874,285 - -0.4
1,874,346 - +0.7
1,874,368 + +0.1
1,874,390 - -0.6
1,874,426 - -0.6
1,874,476 + CA264_08125 0.20 +1.1
1,874,477 - CA264_08125 0.20 -0.9
1,874,479 - CA264_08125 0.21 -0.7
1,874,496 + CA264_08125 0.26 -0.2
1,874,563 - CA264_08125 0.46 -1.1
1,874,566 + CA264_08125 0.47 -1.6
1,874,575 - CA264_08125 0.50 -0.2
1,874,577 + CA264_08125 0.50 +0.1
1,874,577 + CA264_08125 0.50 -1.1
1,874,577 + CA264_08125 0.50 +0.1
1,874,593 + CA264_08125 0.55 -0.5
1,874,594 - CA264_08125 0.56 -0.5

Or see this region's nucleotide sequence