Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03890

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03885 and CA264_03890 overlap by 4 nucleotidesCA264_03890 and CA264_03895 overlap by 4 nucleotidesCA264_03895 and CA264_03900 are separated by 727 nucleotides CA264_03885: CA264_03885 - hypothetical protein, at 904,762 to 905,751 _03885 CA264_03890: CA264_03890 - family 2 glycosyl transferase, at 905,748 to 906,881 _03890 CA264_03895: CA264_03895 - hypothetical protein, at 906,878 to 907,135 _03895 CA264_03900: CA264_03900 - serine/threonine protein phosphatase, at 907,863 to 909,086 _03900 Position (kb) 905 906 907Strain fitness (log2 ratio) -2 -1 0 1at 904.758 kb on + strandat 904.759 kb on - strandat 904.779 kb on + strandat 904.922 kb on - strand, within CA264_03885at 905.209 kb on + strand, within CA264_03885at 905.210 kb on - strand, within CA264_03885at 905.214 kb on + strand, within CA264_03885at 905.215 kb on - strand, within CA264_03885at 905.220 kb on + strand, within CA264_03885at 905.308 kb on + strand, within CA264_03885at 905.392 kb on + strand, within CA264_03885at 905.485 kb on - strand, within CA264_03885at 905.694 kb on - strandat 905.696 kb on + strandat 905.797 kb on + strandat 905.862 kb on - strand, within CA264_03890at 905.879 kb on - strand, within CA264_03890at 905.975 kb on - strand, within CA264_03890at 906.066 kb on + strand, within CA264_03890at 906.131 kb on - strand, within CA264_03890at 906.131 kb on - strand, within CA264_03890at 906.189 kb on + strand, within CA264_03890at 906.189 kb on + strand, within CA264_03890at 906.190 kb on - strand, within CA264_03890at 906.246 kb on - strand, within CA264_03890at 906.314 kb on + strand, within CA264_03890at 906.374 kb on - strand, within CA264_03890at 906.497 kb on + strand, within CA264_03890at 906.647 kb on - strand, within CA264_03890at 906.696 kb on + strand, within CA264_03890at 906.697 kb on - strand, within CA264_03890at 906.697 kb on - strand, within CA264_03890at 906.765 kb on + strand, within CA264_03890at 906.774 kb on + strandat 906.797 kb on - strandat 906.798 kb on + strandat 906.799 kb on - strandat 906.819 kb on - strandat 906.819 kb on - strandat 906.825 kb on - strandat 906.869 kb on + strandat 906.913 kb on - strand, within CA264_03895at 906.914 kb on + strand, within CA264_03895at 906.914 kb on + strand, within CA264_03895at 906.915 kb on - strand, within CA264_03895at 906.994 kb on + strand, within CA264_03895at 906.995 kb on - strand, within CA264_03895at 906.995 kb on - strand, within CA264_03895at 906.997 kb on - strand, within CA264_03895at 907.008 kb on - strand, within CA264_03895at 907.088 kb on + strand, within CA264_03895at 907.088 kb on + strand, within CA264_03895at 907.088 kb on + strand, within CA264_03895at 907.089 kb on - strand, within CA264_03895at 907.134 kb on - strandat 907.143 kb on + strandat 907.143 kb on + strandat 907.154 kb on + strandat 907.225 kb on + strandat 907.274 kb on + strandat 907.380 kb on + strandat 907.390 kb on + strandat 907.391 kb on - strandat 907.391 kb on - strandat 907.391 kb on - strandat 907.392 kb on + strandat 907.392 kb on + strandat 907.399 kb on - strandat 907.405 kb on - strandat 907.408 kb on + strandat 907.457 kb on + strandat 907.457 kb on + strandat 907.457 kb on + strandat 907.457 kb on + strandat 907.458 kb on - strandat 907.776 kb on - strandat 907.787 kb on + strandat 907.788 kb on - strandat 907.788 kb on - strandat 907.828 kb on - strandat 907.852 kb on + strandat 907.852 kb on + strandat 907.872 kb on - strandat 907.873 kb on + strandat 907.873 kb on + strandat 907.873 kb on + strandat 907.874 kb on - strandat 907.874 kb on - strandat 907.876 kb on + strandat 907.876 kb on + strandat 907.876 kb on + strandat 907.876 kb on + strandat 907.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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904,758 + -0.3
904,759 - +0.9
904,779 + +0.1
904,922 - CA264_03885 0.16 +0.9
905,209 + CA264_03885 0.45 +0.4
905,210 - CA264_03885 0.45 -2.6
905,214 + CA264_03885 0.46 -0.3
905,215 - CA264_03885 0.46 +0.8
905,220 + CA264_03885 0.46 -0.5
905,308 + CA264_03885 0.55 -0.2
905,392 + CA264_03885 0.64 +0.3
905,485 - CA264_03885 0.73 +0.0
905,694 - -0.6
905,696 + -1.2
905,797 + +0.5
905,862 - CA264_03890 0.10 +1.1
905,879 - CA264_03890 0.12 -1.0
905,975 - CA264_03890 0.20 +0.8
906,066 + CA264_03890 0.28 -0.4
906,131 - CA264_03890 0.34 -0.5
906,131 - CA264_03890 0.34 +0.8
906,189 + CA264_03890 0.39 +0.4
906,189 + CA264_03890 0.39 -0.4
906,190 - CA264_03890 0.39 +0.2
906,246 - CA264_03890 0.44 -1.5
906,314 + CA264_03890 0.50 -0.4
906,374 - CA264_03890 0.55 -1.4
906,497 + CA264_03890 0.66 +1.2
906,647 - CA264_03890 0.79 +0.5
906,696 + CA264_03890 0.84 +0.3
906,697 - CA264_03890 0.84 +0.3
906,697 - CA264_03890 0.84 -0.2
906,765 + CA264_03890 0.90 -0.3
906,774 + +0.7
906,797 - -0.8
906,798 + -0.1
906,799 - -0.7
906,819 - +0.0
906,819 - +1.0
906,825 - +1.4
906,869 + +0.7
906,913 - CA264_03895 0.14 +1.0
906,914 + CA264_03895 0.14 -1.6
906,914 + CA264_03895 0.14 -0.5
906,915 - CA264_03895 0.14 +0.7
906,994 + CA264_03895 0.45 +1.0
906,995 - CA264_03895 0.45 +0.1
906,995 - CA264_03895 0.45 +0.2
906,997 - CA264_03895 0.46 +0.2
907,008 - CA264_03895 0.50 -0.3
907,088 + CA264_03895 0.81 -0.0
907,088 + CA264_03895 0.81 +0.4
907,088 + CA264_03895 0.81 +0.4
907,089 - CA264_03895 0.82 -0.0
907,134 - +0.5
907,143 + +1.1
907,143 + +0.1
907,154 + +0.4
907,225 + +0.7
907,274 + -0.4
907,380 + -0.2
907,390 + +1.3
907,391 - -0.4
907,391 - -0.4
907,391 - +0.4
907,392 + -0.3
907,392 + +1.1
907,399 - +1.6
907,405 - -0.9
907,408 + +1.0
907,457 + -0.5
907,457 + -1.6
907,457 + +1.0
907,457 + +0.2
907,458 - +0.4
907,776 - -0.4
907,787 + +0.4
907,788 - +0.1
907,788 - +0.2
907,828 - -0.2
907,852 + +1.0
907,852 + +0.5
907,872 - +0.2
907,873 + -0.6
907,873 + +0.2
907,873 + -0.2
907,874 - -0.1
907,874 - +0.3
907,876 + -0.7
907,876 + -0.2
907,876 + +0.4
907,876 + -0.2
907,877 - +1.2

Or see this region's nucleotide sequence