Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21635 and ABID97_RS21640 are separated by 12 nucleotides ABID97_RS21640 and ABID97_RS21645 are separated by 18 nucleotides ABID97_RS21645 and ABID97_RS21650 are separated by 61 nucleotides
ABID97_RS21635: ABID97_RS21635 - amidophosphoribosyltransferase, at 4,476,355 to 4,477,857
_RS21635
ABID97_RS21640: ABID97_RS21640 - CvpA family protein, at 4,477,870 to 4,478,355
_RS21640
ABID97_RS21645: ABID97_RS21645 - SPOR domain-containing protein, at 4,478,374 to 4,479,249
_RS21645
ABID97_RS21650: ABID97_RS21650 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 4,479,311 to 4,480,618
_RS21650
Position (kb) 4478
4479
4480 Strain fitness (log2 ratio) -1
0
1
2 at 4477.881 kb on - strand at 4478.373 kb on - strand at 4478.376 kb on - strand at 4478.376 kb on - strand at 4478.376 kb on - strand at 4478.510 kb on + strand, within ABID97_RS21645 at 4478.510 kb on + strand, within ABID97_RS21645 at 4478.511 kb on - strand, within ABID97_RS21645 at 4478.511 kb on - strand, within ABID97_RS21645
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,477,881 - -0.8 4,478,373 - +2.3 4,478,376 - +1.5 4,478,376 - -0.5 4,478,376 - +0.4 4,478,510 + ABID97_RS21645 0.16 +0.1 4,478,510 + ABID97_RS21645 0.16 -0.9 4,478,511 - ABID97_RS21645 0.16 -0.9 4,478,511 - ABID97_RS21645 0.16 -0.9
Or see this region's nucleotide sequence