Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20665 and ABID97_RS20670 are separated by 21 nucleotides ABID97_RS20670 and ABID97_RS20675 are separated by 102 nucleotides ABID97_RS20675 and ABID97_RS20680 are separated by 14 nucleotides ABID97_RS20680 and ABID97_RS20685 are separated by 12 nucleotides
ABID97_RS20665: ABID97_RS20665 - NUDIX domain-containing protein, at 4,268,533 to 4,269,003
_RS20665
ABID97_RS20670: ABID97_RS20670 - sulfite exporter TauE/SafE family protein, at 4,269,025 to 4,269,783
_RS20670
ABID97_RS20675: ABID97_RS20675 - LysR family transcriptional regulator, at 4,269,886 to 4,270,791
_RS20675
ABID97_RS20680: ABID97_RS20680 - nucleoside 2-deoxyribosyltransferase, at 4,270,806 to 4,271,348
_RS20680
ABID97_RS20685: ABID97_RS20685 - AraC family transcriptional regulator, at 4,271,361 to 4,272,260
_RS20685
Position (kb) 4269
4270
4271 Strain fitness (log2 ratio) -2
-1
0
1 at 4268.956 kb on + strand, within ABID97_RS20665 at 4269.050 kb on + strand at 4269.050 kb on + strand at 4269.050 kb on + strand at 4269.050 kb on + strand at 4269.050 kb on + strand at 4269.050 kb on + strand at 4269.051 kb on - strand at 4269.302 kb on + strand, within ABID97_RS20670 at 4269.437 kb on + strand, within ABID97_RS20670 at 4269.869 kb on + strand at 4269.869 kb on + strand at 4270.145 kb on - strand, within ABID97_RS20675 at 4271.002 kb on + strand, within ABID97_RS20680 at 4271.002 kb on + strand, within ABID97_RS20680 at 4271.002 kb on + strand, within ABID97_RS20680 at 4271.002 kb on + strand, within ABID97_RS20680 at 4271.003 kb on - strand, within ABID97_RS20680 at 4271.003 kb on - strand, within ABID97_RS20680 at 4271.003 kb on - strand, within ABID97_RS20680 at 4271.003 kb on - strand, within ABID97_RS20680 at 4271.161 kb on + strand, within ABID97_RS20680 at 4271.162 kb on - strand, within ABID97_RS20680 at 4271.308 kb on + strand at 4271.308 kb on + strand at 4271.308 kb on + strand at 4271.308 kb on + strand at 4271.362 kb on + strand at 4271.363 kb on - strand at 4271.363 kb on - strand at 4271.465 kb on - strand, within ABID97_RS20685 at 4271.465 kb on - strand, within ABID97_RS20685 at 4271.614 kb on + strand, within ABID97_RS20685 at 4271.614 kb on + strand, within ABID97_RS20685 at 4271.615 kb on - strand, within ABID97_RS20685 at 4271.615 kb on - strand, within ABID97_RS20685 at 4271.686 kb on + strand, within ABID97_RS20685 at 4271.687 kb on - strand, within ABID97_RS20685
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,268,956 + ABID97_RS20665 0.90 -0.5 4,269,050 + +0.9 4,269,050 + +0.0 4,269,050 + +0.3 4,269,050 + +0.2 4,269,050 + +0.2 4,269,050 + +0.6 4,269,051 - +1.0 4,269,302 + ABID97_RS20670 0.36 +1.0 4,269,437 + ABID97_RS20670 0.54 +1.0 4,269,869 + +0.9 4,269,869 + -0.1 4,270,145 - ABID97_RS20675 0.29 +0.0 4,271,002 + ABID97_RS20680 0.36 +0.4 4,271,002 + ABID97_RS20680 0.36 +0.5 4,271,002 + ABID97_RS20680 0.36 +1.4 4,271,002 + ABID97_RS20680 0.36 +1.1 4,271,003 - ABID97_RS20680 0.36 +0.2 4,271,003 - ABID97_RS20680 0.36 +0.1 4,271,003 - ABID97_RS20680 0.36 +0.6 4,271,003 - ABID97_RS20680 0.36 +0.6 4,271,161 + ABID97_RS20680 0.65 -0.7 4,271,162 - ABID97_RS20680 0.66 -1.8 4,271,308 + +0.2 4,271,308 + -1.2 4,271,308 + -0.0 4,271,308 + -0.1 4,271,362 + -0.1 4,271,363 - -1.0 4,271,363 - -0.0 4,271,465 - ABID97_RS20685 0.12 +0.5 4,271,465 - ABID97_RS20685 0.12 -0.4 4,271,614 + ABID97_RS20685 0.28 -0.8 4,271,614 + ABID97_RS20685 0.28 -0.8 4,271,615 - ABID97_RS20685 0.28 -0.1 4,271,615 - ABID97_RS20685 0.28 +0.1 4,271,686 + ABID97_RS20685 0.36 -1.2 4,271,687 - ABID97_RS20685 0.36 -0.9
Or see this region's nucleotide sequence