Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19855

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19840 and ABID97_RS19845 are separated by 20 nucleotidesABID97_RS19845 and ABID97_RS19850 are separated by 16 nucleotidesABID97_RS19850 and ABID97_RS19855 overlap by 4 nucleotidesABID97_RS19855 and ABID97_RS19860 are separated by 146 nucleotides ABID97_RS19840: ABID97_RS19840 - hypothetical protein, at 4,094,419 to 4,096,233 _RS19840 ABID97_RS19845: ABID97_RS19845 - hypothetical protein, at 4,096,254 to 4,096,505 _RS19845 ABID97_RS19850: ABID97_RS19850 - hypothetical protein, at 4,096,522 to 4,096,701 _RS19850 ABID97_RS19855: ABID97_RS19855 - AAA family ATPase, at 4,096,698 to 4,097,825 _RS19855 ABID97_RS19860: ABID97_RS19860 - DUF2167 domain-containing protein, at 4,097,972 to 4,098,901 _RS19860 Position (kb) 4096 4097 4098Strain fitness (log2 ratio) -1 0 1 2at 4096.138 kb on + strandat 4096.138 kb on + strandat 4096.138 kb on + strandat 4096.139 kb on - strandat 4096.139 kb on - strandat 4097.002 kb on + strand, within ABID97_RS19855at 4097.478 kb on + strand, within ABID97_RS19855at 4097.594 kb on + strand, within ABID97_RS19855at 4097.611 kb on + strand, within ABID97_RS19855at 4097.621 kb on - strand, within ABID97_RS19855at 4097.673 kb on - strand, within ABID97_RS19855at 4097.813 kb on + strandat 4097.813 kb on + strandat 4097.814 kb on - strandat 4097.814 kb on - strandat 4098.350 kb on + strand, within ABID97_RS19860at 4098.575 kb on + strand, within ABID97_RS19860at 4098.576 kb on - strand, within ABID97_RS19860at 4098.585 kb on - strand, within ABID97_RS19860at 4098.650 kb on + strand, within ABID97_RS19860at 4098.650 kb on + strand, within ABID97_RS19860at 4098.651 kb on - strand, within ABID97_RS19860at 4098.651 kb on - strand, within ABID97_RS19860at 4098.651 kb on - strand, within ABID97_RS19860

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,096,138 + -0.0
4,096,138 + +1.0
4,096,138 + -0.6
4,096,139 - +0.5
4,096,139 - -0.0
4,097,002 + ABID97_RS19855 0.27 -1.4
4,097,478 + ABID97_RS19855 0.69 +0.2
4,097,594 + ABID97_RS19855 0.79 +2.0
4,097,611 + ABID97_RS19855 0.81 +0.2
4,097,621 - ABID97_RS19855 0.82 +0.9
4,097,673 - ABID97_RS19855 0.86 +0.3
4,097,813 + -0.2
4,097,813 + -0.1
4,097,814 - +0.0
4,097,814 - -0.6
4,098,350 + ABID97_RS19860 0.41 -0.1
4,098,575 + ABID97_RS19860 0.65 +0.9
4,098,576 - ABID97_RS19860 0.65 -0.2
4,098,585 - ABID97_RS19860 0.66 +0.3
4,098,650 + ABID97_RS19860 0.73 +0.5
4,098,650 + ABID97_RS19860 0.73 -0.4
4,098,651 - ABID97_RS19860 0.73 +0.1
4,098,651 - ABID97_RS19860 0.73 -0.7
4,098,651 - ABID97_RS19860 0.73 -0.8

Or see this region's nucleotide sequence