Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19840 and ABID97_RS19845 are separated by 20 nucleotides ABID97_RS19845 and ABID97_RS19850 are separated by 16 nucleotides ABID97_RS19850 and ABID97_RS19855 overlap by 4 nucleotides ABID97_RS19855 and ABID97_RS19860 are separated by 146 nucleotides
ABID97_RS19840: ABID97_RS19840 - hypothetical protein, at 4,094,419 to 4,096,233
_RS19840
ABID97_RS19845: ABID97_RS19845 - hypothetical protein, at 4,096,254 to 4,096,505
_RS19845
ABID97_RS19850: ABID97_RS19850 - hypothetical protein, at 4,096,522 to 4,096,701
_RS19850
ABID97_RS19855: ABID97_RS19855 - AAA family ATPase, at 4,096,698 to 4,097,825
_RS19855
ABID97_RS19860: ABID97_RS19860 - DUF2167 domain-containing protein, at 4,097,972 to 4,098,901
_RS19860
Position (kb)
4096
4097
4098 Strain fitness (log2 ratio)
-1
0
1
2 at 4096.138 kb on + strand at 4096.138 kb on + strand at 4096.138 kb on + strand at 4096.139 kb on - strand at 4096.139 kb on - strand at 4097.002 kb on + strand, within ABID97_RS19855 at 4097.478 kb on + strand, within ABID97_RS19855 at 4097.594 kb on + strand, within ABID97_RS19855 at 4097.611 kb on + strand, within ABID97_RS19855 at 4097.621 kb on - strand, within ABID97_RS19855 at 4097.673 kb on - strand, within ABID97_RS19855 at 4097.813 kb on + strand at 4097.813 kb on + strand at 4097.814 kb on - strand at 4097.814 kb on - strand at 4098.350 kb on + strand, within ABID97_RS19860 at 4098.575 kb on + strand, within ABID97_RS19860 at 4098.576 kb on - strand, within ABID97_RS19860 at 4098.585 kb on - strand, within ABID97_RS19860 at 4098.650 kb on + strand, within ABID97_RS19860 at 4098.650 kb on + strand, within ABID97_RS19860 at 4098.651 kb on - strand, within ABID97_RS19860 at 4098.651 kb on - strand, within ABID97_RS19860 at 4098.651 kb on - strand, within ABID97_RS19860
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,096,138 + -0.0 4,096,138 + +1.0 4,096,138 + -0.6 4,096,139 - +0.5 4,096,139 - -0.0 4,097,002 + ABID97_RS19855 0.27 -1.4 4,097,478 + ABID97_RS19855 0.69 +0.2 4,097,594 + ABID97_RS19855 0.79 +2.0 4,097,611 + ABID97_RS19855 0.81 +0.2 4,097,621 - ABID97_RS19855 0.82 +0.9 4,097,673 - ABID97_RS19855 0.86 +0.3 4,097,813 + -0.2 4,097,813 + -0.1 4,097,814 - +0.0 4,097,814 - -0.6 4,098,350 + ABID97_RS19860 0.41 -0.1 4,098,575 + ABID97_RS19860 0.65 +0.9 4,098,576 - ABID97_RS19860 0.65 -0.2 4,098,585 - ABID97_RS19860 0.66 +0.3 4,098,650 + ABID97_RS19860 0.73 +0.5 4,098,650 + ABID97_RS19860 0.73 -0.4 4,098,651 - ABID97_RS19860 0.73 +0.1 4,098,651 - ABID97_RS19860 0.73 -0.7 4,098,651 - ABID97_RS19860 0.73 -0.8
Or see this region's nucleotide sequence