Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19155 and ABID97_RS19160 overlap by 4 nucleotides ABID97_RS19160 and ABID97_RS19165 are separated by 88 nucleotides ABID97_RS19165 and ABID97_RS19170 are separated by 46 nucleotides
ABID97_RS19155: ABID97_RS19155 - polysaccharide biosynthesis protein, at 3,953,771 to 3,955,036
_RS19155
ABID97_RS19160: ABID97_RS19160 - glycosyltransferase WbuB, at 3,955,033 to 3,956,280
_RS19160
ABID97_RS19165: ABID97_RS19165 - response regulator transcription factor, at 3,956,369 to 3,957,160
_RS19165
ABID97_RS19170: ABID97_RS19170 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 3,957,207 to 3,958,718
_RS19170
Position (kb)
3955
3956
3957 Strain fitness (log2 ratio)
-2
-1
0
1 at 3954.258 kb on + strand, within ABID97_RS19155 at 3954.764 kb on + strand, within ABID97_RS19155 at 3954.782 kb on + strand, within ABID97_RS19155 at 3954.957 kb on - strand at 3955.048 kb on + strand at 3955.220 kb on - strand, within ABID97_RS19160 at 3955.454 kb on - strand, within ABID97_RS19160 at 3955.751 kb on - strand, within ABID97_RS19160 at 3955.751 kb on - strand, within ABID97_RS19160 at 3956.439 kb on - strand at 3957.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 3,954,258 + ABID97_RS19155 0.38 +0.2 3,954,764 + ABID97_RS19155 0.78 +0.1 3,954,782 + ABID97_RS19155 0.80 +0.2 3,954,957 - +0.2 3,955,048 + -0.1 3,955,220 - ABID97_RS19160 0.15 -0.2 3,955,454 - ABID97_RS19160 0.34 -1.9 3,955,751 - ABID97_RS19160 0.58 -0.1 3,955,751 - ABID97_RS19160 0.58 -1.1 3,956,439 - +0.4 3,957,093 - -0.3
Or see this region's nucleotide sequence