Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19160

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19155 and ABID97_RS19160 overlap by 4 nucleotidesABID97_RS19160 and ABID97_RS19165 are separated by 88 nucleotidesABID97_RS19165 and ABID97_RS19170 are separated by 46 nucleotides ABID97_RS19155: ABID97_RS19155 - polysaccharide biosynthesis protein, at 3,953,771 to 3,955,036 _RS19155 ABID97_RS19160: ABID97_RS19160 - glycosyltransferase WbuB, at 3,955,033 to 3,956,280 _RS19160 ABID97_RS19165: ABID97_RS19165 - response regulator transcription factor, at 3,956,369 to 3,957,160 _RS19165 ABID97_RS19170: ABID97_RS19170 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 3,957,207 to 3,958,718 _RS19170 Position (kb) 3955 3956 3957Strain fitness (log2 ratio) -2 -1 0 1at 3954.258 kb on + strand, within ABID97_RS19155at 3954.764 kb on + strand, within ABID97_RS19155at 3954.782 kb on + strand, within ABID97_RS19155at 3954.957 kb on - strandat 3955.048 kb on + strandat 3955.220 kb on - strand, within ABID97_RS19160at 3955.454 kb on - strand, within ABID97_RS19160at 3955.751 kb on - strand, within ABID97_RS19160at 3955.751 kb on - strand, within ABID97_RS19160at 3956.439 kb on - strandat 3957.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,954,258 + ABID97_RS19155 0.38 +0.2
3,954,764 + ABID97_RS19155 0.78 +0.1
3,954,782 + ABID97_RS19155 0.80 +0.2
3,954,957 - +0.2
3,955,048 + -0.1
3,955,220 - ABID97_RS19160 0.15 -0.2
3,955,454 - ABID97_RS19160 0.34 -1.9
3,955,751 - ABID97_RS19160 0.58 -0.1
3,955,751 - ABID97_RS19160 0.58 -1.1
3,956,439 - +0.4
3,957,093 - -0.3

Or see this region's nucleotide sequence