Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13260 and ABID97_RS13265 are separated by 23 nucleotides ABID97_RS13265 and ABID97_RS13270 are separated by 162 nucleotides ABID97_RS13270 and ABID97_RS13275 are separated by 23 nucleotides
ABID97_RS13260: ABID97_RS13260 - acyl-CoA dehydrogenase family protein, at 2,762,007 to 2,763,209
_RS13260
ABID97_RS13265: ABID97_RS13265 - tripartite tricarboxylate transporter substrate binding protein, at 2,763,233 to 2,764,216
_RS13265
ABID97_RS13270: ABID97_RS13270 - TetR/AcrR family transcriptional regulator, at 2,764,379 to 2,765,044
_RS13270
ABID97_RS13275: ABID97_RS13275 - MDR family oxidoreductase, at 2,765,068 to 2,766,054
_RS13275
Position (kb)
2763
2764
2765 Strain fitness (log2 ratio)
-1
0
1 at 2763.079 kb on + strand, within ABID97_RS13260 at 2763.080 kb on - strand, within ABID97_RS13260 at 2763.095 kb on + strand at 2763.199 kb on + strand at 2763.200 kb on - strand at 2763.308 kb on - strand at 2763.660 kb on + strand, within ABID97_RS13265 at 2763.725 kb on - strand, within ABID97_RS13265 at 2763.774 kb on + strand, within ABID97_RS13265 at 2763.859 kb on - strand, within ABID97_RS13265 at 2764.454 kb on - strand, within ABID97_RS13270 at 2764.559 kb on + strand, within ABID97_RS13270 at 2764.559 kb on + strand, within ABID97_RS13270 at 2764.604 kb on + strand, within ABID97_RS13270 at 2764.985 kb on + strand at 2764.985 kb on + strand at 2764.985 kb on + strand at 2765.068 kb on - strand at 2765.068 kb on - strand at 2765.191 kb on + strand, within ABID97_RS13275 at 2765.191 kb on + strand, within ABID97_RS13275 at 2765.191 kb on + strand, within ABID97_RS13275
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 2,763,079 + ABID97_RS13260 0.89 +0.4 2,763,080 - ABID97_RS13260 0.89 -0.9 2,763,095 + -0.1 2,763,199 + +0.5 2,763,200 - -0.8 2,763,308 - -0.2 2,763,660 + ABID97_RS13265 0.43 -0.1 2,763,725 - ABID97_RS13265 0.50 +0.5 2,763,774 + ABID97_RS13265 0.55 +1.1 2,763,859 - ABID97_RS13265 0.64 +1.0 2,764,454 - ABID97_RS13270 0.11 +0.8 2,764,559 + ABID97_RS13270 0.27 -1.5 2,764,559 + ABID97_RS13270 0.27 -0.3 2,764,604 + ABID97_RS13270 0.34 -0.1 2,764,985 + +0.1 2,764,985 + -0.4 2,764,985 + -0.5 2,765,068 - -0.5 2,765,068 - -0.3 2,765,191 + ABID97_RS13275 0.12 +0.5 2,765,191 + ABID97_RS13275 0.12 -0.1 2,765,191 + ABID97_RS13275 0.12 +0.6
Or see this region's nucleotide sequence