Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13265

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13260 and ABID97_RS13265 are separated by 23 nucleotidesABID97_RS13265 and ABID97_RS13270 are separated by 162 nucleotidesABID97_RS13270 and ABID97_RS13275 are separated by 23 nucleotides ABID97_RS13260: ABID97_RS13260 - acyl-CoA dehydrogenase family protein, at 2,762,007 to 2,763,209 _RS13260 ABID97_RS13265: ABID97_RS13265 - tripartite tricarboxylate transporter substrate binding protein, at 2,763,233 to 2,764,216 _RS13265 ABID97_RS13270: ABID97_RS13270 - TetR/AcrR family transcriptional regulator, at 2,764,379 to 2,765,044 _RS13270 ABID97_RS13275: ABID97_RS13275 - MDR family oxidoreductase, at 2,765,068 to 2,766,054 _RS13275 Position (kb) 2763 2764 2765Strain fitness (log2 ratio) -1 0 1at 2763.079 kb on + strand, within ABID97_RS13260at 2763.080 kb on - strand, within ABID97_RS13260at 2763.095 kb on + strandat 2763.199 kb on + strandat 2763.200 kb on - strandat 2763.308 kb on - strandat 2763.660 kb on + strand, within ABID97_RS13265at 2763.725 kb on - strand, within ABID97_RS13265at 2763.774 kb on + strand, within ABID97_RS13265at 2763.859 kb on - strand, within ABID97_RS13265at 2764.454 kb on - strand, within ABID97_RS13270at 2764.559 kb on + strand, within ABID97_RS13270at 2764.559 kb on + strand, within ABID97_RS13270at 2764.604 kb on + strand, within ABID97_RS13270at 2764.985 kb on + strandat 2764.985 kb on + strandat 2764.985 kb on + strandat 2765.068 kb on - strandat 2765.068 kb on - strandat 2765.191 kb on + strand, within ABID97_RS13275at 2765.191 kb on + strand, within ABID97_RS13275at 2765.191 kb on + strand, within ABID97_RS13275

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,763,079 + ABID97_RS13260 0.89 +0.4
2,763,080 - ABID97_RS13260 0.89 -0.9
2,763,095 + -0.1
2,763,199 + +0.5
2,763,200 - -0.8
2,763,308 - -0.2
2,763,660 + ABID97_RS13265 0.43 -0.1
2,763,725 - ABID97_RS13265 0.50 +0.5
2,763,774 + ABID97_RS13265 0.55 +1.1
2,763,859 - ABID97_RS13265 0.64 +1.0
2,764,454 - ABID97_RS13270 0.11 +0.8
2,764,559 + ABID97_RS13270 0.27 -1.5
2,764,559 + ABID97_RS13270 0.27 -0.3
2,764,604 + ABID97_RS13270 0.34 -0.1
2,764,985 + +0.1
2,764,985 + -0.4
2,764,985 + -0.5
2,765,068 - -0.5
2,765,068 - -0.3
2,765,191 + ABID97_RS13275 0.12 +0.5
2,765,191 + ABID97_RS13275 0.12 -0.1
2,765,191 + ABID97_RS13275 0.12 +0.6

Or see this region's nucleotide sequence