Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11730

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11725 and ABID97_RS11730 are separated by 65 nucleotidesABID97_RS11730 and ABID97_RS11735 overlap by 4 nucleotides ABID97_RS11725: ABID97_RS11725 - tripartite tricarboxylate transporter substrate binding protein, at 2,425,098 to 2,426,081 _RS11725 ABID97_RS11730: ABID97_RS11730 - fumarylacetoacetate hydrolase family protein, at 2,426,147 to 2,426,995 _RS11730 ABID97_RS11735: ABID97_RS11735 - PDR/VanB family oxidoreductase, at 2,426,992 to 2,427,963 _RS11735 Position (kb) 2426 2427Strain fitness (log2 ratio) -1 0 1at 2425.185 kb on + strandat 2425.493 kb on - strand, within ABID97_RS11725at 2425.496 kb on - strand, within ABID97_RS11725at 2425.496 kb on - strand, within ABID97_RS11725at 2425.572 kb on + strand, within ABID97_RS11725at 2426.162 kb on + strandat 2426.163 kb on - strandat 2426.918 kb on + strandat 2426.918 kb on + strandat 2427.151 kb on + strand, within ABID97_RS11735at 2427.486 kb on - strand, within ABID97_RS11735at 2427.494 kb on - strand, within ABID97_RS11735at 2427.655 kb on + strand, within ABID97_RS11735at 2427.879 kb on + strandat 2427.880 kb on - strandat 2427.880 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,425,185 + +0.2
2,425,493 - ABID97_RS11725 0.40 -0.4
2,425,496 - ABID97_RS11725 0.40 -0.4
2,425,496 - ABID97_RS11725 0.40 -0.4
2,425,572 + ABID97_RS11725 0.48 -0.9
2,426,162 + +0.9
2,426,163 - -0.3
2,426,918 + +0.2
2,426,918 + -0.7
2,427,151 + ABID97_RS11735 0.16 -0.2
2,427,486 - ABID97_RS11735 0.51 +0.2
2,427,494 - ABID97_RS11735 0.52 +0.6
2,427,655 + ABID97_RS11735 0.68 -0.2
2,427,879 + -0.3
2,427,880 - -0.1
2,427,880 - +0.2

Or see this region's nucleotide sequence