Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08205 and ABID97_RS08210 are separated by 28 nucleotides ABID97_RS08210 and ABID97_RS08215 are separated by 174 nucleotides ABID97_RS08215 and ABID97_RS08220 are separated by 31 nucleotides
ABID97_RS08205: ABID97_RS08205 - AI-2E family transporter, at 1,723,515 to 1,724,780
_RS08205
ABID97_RS08210: ABID97_RS08210 - MFS transporter, at 1,724,809 to 1,726,056
_RS08210
ABID97_RS08215: ABID97_RS08215 - hypothetical protein, at 1,726,231 to 1,726,761
_RS08215
ABID97_RS08220: ABID97_RS08220 - phosphoenolpyruvate carboxylase, at 1,726,793 to 1,729,639
_RS08220
Position (kb) 1724
1725
1726
1727 Strain fitness (log2 ratio) -2
-1
0
1 at 1723.810 kb on - strand, within ABID97_RS08205 at 1723.917 kb on + strand, within ABID97_RS08205 at 1724.148 kb on + strand, within ABID97_RS08205 at 1724.149 kb on - strand, within ABID97_RS08205 at 1724.356 kb on + strand, within ABID97_RS08205 at 1724.356 kb on + strand, within ABID97_RS08205 at 1724.466 kb on + strand, within ABID97_RS08205 at 1724.467 kb on - strand, within ABID97_RS08205 at 1724.824 kb on - strand at 1724.930 kb on + strand at 1724.931 kb on - strand at 1724.931 kb on - strand at 1725.248 kb on + strand, within ABID97_RS08210 at 1725.248 kb on + strand, within ABID97_RS08210 at 1725.248 kb on + strand, within ABID97_RS08210 at 1725.249 kb on - strand, within ABID97_RS08210 at 1725.317 kb on + strand, within ABID97_RS08210 at 1725.318 kb on - strand, within ABID97_RS08210 at 1725.318 kb on - strand, within ABID97_RS08210 at 1725.323 kb on + strand, within ABID97_RS08210 at 1725.324 kb on - strand, within ABID97_RS08210 at 1725.324 kb on - strand, within ABID97_RS08210 at 1725.324 kb on - strand, within ABID97_RS08210 at 1726.166 kb on + strand at 1726.679 kb on + strand, within ABID97_RS08215 at 1726.680 kb on - strand, within ABID97_RS08215 at 1726.926 kb on + strand at 1726.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,723,810 - ABID97_RS08205 0.23 +0.0 1,723,917 + ABID97_RS08205 0.32 -0.2 1,724,148 + ABID97_RS08205 0.50 -0.3 1,724,149 - ABID97_RS08205 0.50 -0.5 1,724,356 + ABID97_RS08205 0.66 +0.3 1,724,356 + ABID97_RS08205 0.66 -0.1 1,724,466 + ABID97_RS08205 0.75 +0.1 1,724,467 - ABID97_RS08205 0.75 -0.4 1,724,824 - +0.2 1,724,930 + +0.4 1,724,931 - +0.1 1,724,931 - -0.6 1,725,248 + ABID97_RS08210 0.35 +1.2 1,725,248 + ABID97_RS08210 0.35 -0.4 1,725,248 + ABID97_RS08210 0.35 -0.1 1,725,249 - ABID97_RS08210 0.35 -0.1 1,725,317 + ABID97_RS08210 0.41 +1.1 1,725,318 - ABID97_RS08210 0.41 +0.6 1,725,318 - ABID97_RS08210 0.41 -0.0 1,725,323 + ABID97_RS08210 0.41 -0.0 1,725,324 - ABID97_RS08210 0.41 -0.0 1,725,324 - ABID97_RS08210 0.41 +0.3 1,725,324 - ABID97_RS08210 0.41 +0.3 1,726,166 + +0.6 1,726,679 + ABID97_RS08215 0.84 +0.8 1,726,680 - ABID97_RS08215 0.85 -0.4 1,726,926 + -2.7 1,726,927 - +1.7
Or see this region's nucleotide sequence