Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04395 and ABID97_RS04400 overlap by 10 nucleotides ABID97_RS04400 and ABID97_RS04405 overlap by 4 nucleotides
ABID97_RS04395: ABID97_RS04395 - AAA family ATPase, at 907,654 to 908,799
_RS04395
ABID97_RS04400: ABID97_RS04400 - DUF5682 family protein, at 908,790 to 911,354
_RS04400
ABID97_RS04405: ABID97_RS04405 - FxLYD domain-containing protein, at 911,351 to 913,033
_RS04405
Position (kb) 908
909
910
911
912 Strain fitness (log2 ratio) -1
0
1 at 907.852 kb on + strand, within ABID97_RS04395 at 907.853 kb on - strand, within ABID97_RS04395 at 907.853 kb on - strand, within ABID97_RS04395 at 908.035 kb on + strand, within ABID97_RS04395 at 908.035 kb on + strand, within ABID97_RS04395 at 908.036 kb on - strand, within ABID97_RS04395 at 908.036 kb on - strand, within ABID97_RS04395 at 908.104 kb on + strand, within ABID97_RS04395 at 908.590 kb on + strand, within ABID97_RS04395 at 908.713 kb on + strand at 908.714 kb on - strand at 908.714 kb on - strand at 908.797 kb on + strand at 908.798 kb on - strand at 909.136 kb on - strand, within ABID97_RS04400 at 909.739 kb on - strand, within ABID97_RS04400 at 909.741 kb on + strand, within ABID97_RS04400 at 909.741 kb on + strand, within ABID97_RS04400 at 910.894 kb on - strand, within ABID97_RS04400 at 910.894 kb on - strand, within ABID97_RS04400 at 911.221 kb on - strand at 911.427 kb on - strand at 911.840 kb on + strand, within ABID97_RS04405 at 911.840 kb on + strand, within ABID97_RS04405 at 911.991 kb on - strand, within ABID97_RS04405 at 912.137 kb on + strand, within ABID97_RS04405 at 912.284 kb on + strand, within ABID97_RS04405 at 912.285 kb on - strand, within ABID97_RS04405
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 907,852 + ABID97_RS04395 0.17 -0.2 907,853 - ABID97_RS04395 0.17 -0.2 907,853 - ABID97_RS04395 0.17 -0.3 908,035 + ABID97_RS04395 0.33 -0.1 908,035 + ABID97_RS04395 0.33 -0.4 908,036 - ABID97_RS04395 0.33 -0.2 908,036 - ABID97_RS04395 0.33 -0.5 908,104 + ABID97_RS04395 0.39 +0.2 908,590 + ABID97_RS04395 0.82 -0.7 908,713 + -0.2 908,714 - +0.1 908,714 - +0.1 908,797 + -0.3 908,798 - -0.4 909,136 - ABID97_RS04400 0.13 -0.3 909,739 - ABID97_RS04400 0.37 -0.8 909,741 + ABID97_RS04400 0.37 -0.5 909,741 + ABID97_RS04400 0.37 -0.0 910,894 - ABID97_RS04400 0.82 +0.2 910,894 - ABID97_RS04400 0.82 -0.9 911,221 - +0.1 911,427 - +0.3 911,840 + ABID97_RS04405 0.29 -0.6 911,840 + ABID97_RS04405 0.29 -0.6 911,991 - ABID97_RS04405 0.38 -0.2 912,137 + ABID97_RS04405 0.47 -0.3 912,284 + ABID97_RS04405 0.55 -0.1 912,285 - ABID97_RS04405 0.55 +0.2
Or see this region's nucleotide sequence