Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_5053

Experiment: KB with Carbenicillin 3.1 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5052 and Psyr_5053 are separated by 29 nucleotidesPsyr_5053 and Psyr_5054 are separated by 55 nucleotides Psyr_5052: Psyr_5052 - Sodium:alanine symporter, at 5,993,786 to 5,995,237 _5052 Psyr_5053: Psyr_5053 - asparaginase, at 5,995,267 to 5,996,271 _5053 Psyr_5054: Psyr_5054 - Protein of unknown function UPF0187, at 5,996,327 to 5,997,214 _5054 Position (kb) 5995 5996 5997Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5994.336 kb on + strand, within Psyr_5052at 5994.419 kb on + strand, within Psyr_5052at 5994.420 kb on - strand, within Psyr_5052at 5994.420 kb on - strand, within Psyr_5052at 5994.420 kb on - strand, within Psyr_5052at 5994.420 kb on - strand, within Psyr_5052at 5994.420 kb on - strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.478 kb on + strand, within Psyr_5052at 5994.478 kb on + strand, within Psyr_5052at 5994.478 kb on + strand, within Psyr_5052at 5994.478 kb on + strand, within Psyr_5052at 5994.478 kb on + strand, within Psyr_5052at 5994.479 kb on - strand, within Psyr_5052at 5994.479 kb on - strand, within Psyr_5052at 5994.724 kb on + strand, within Psyr_5052at 5994.724 kb on + strand, within Psyr_5052at 5994.724 kb on + strand, within Psyr_5052at 5994.726 kb on + strand, within Psyr_5052at 5994.727 kb on - strand, within Psyr_5052at 5994.727 kb on - strand, within Psyr_5052at 5994.727 kb on - strand, within Psyr_5052at 5994.727 kb on - strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.728 kb on + strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.729 kb on - strand, within Psyr_5052at 5994.811 kb on + strand, within Psyr_5052at 5994.811 kb on + strand, within Psyr_5052at 5994.812 kb on - strand, within Psyr_5052at 5994.855 kb on - strand, within Psyr_5052at 5994.855 kb on - strand, within Psyr_5052at 5994.860 kb on + strand, within Psyr_5052at 5994.860 kb on + strand, within Psyr_5052at 5994.860 kb on + strand, within Psyr_5052at 5994.860 kb on + strand, within Psyr_5052at 5994.860 kb on + strand, within Psyr_5052at 5994.860 kb on + strand, within Psyr_5052at 5994.861 kb on - strand, within Psyr_5052at 5994.861 kb on - strand, within Psyr_5052at 5994.861 kb on - strand, within Psyr_5052at 5994.861 kb on - strand, within Psyr_5052at 5994.861 kb on - strand, within Psyr_5052at 5994.863 kb on + strand, within Psyr_5052at 5994.863 kb on + strand, within Psyr_5052at 5994.863 kb on + strand, within Psyr_5052at 5994.863 kb on + strand, within Psyr_5052at 5994.863 kb on + strand, within Psyr_5052at 5994.864 kb on - strand, within Psyr_5052at 5994.864 kb on - strand, within Psyr_5052at 5994.864 kb on - strand, within Psyr_5052at 5994.924 kb on - strand, within Psyr_5052at 5994.924 kb on - strand, within Psyr_5052at 5994.937 kb on - strand, within Psyr_5052at 5994.942 kb on + strand, within Psyr_5052at 5994.981 kb on + strand, within Psyr_5052at 5994.981 kb on + strand, within Psyr_5052at 5994.981 kb on + strand, within Psyr_5052at 5994.981 kb on + strand, within Psyr_5052at 5994.982 kb on - strand, within Psyr_5052at 5994.982 kb on - strand, within Psyr_5052at 5994.982 kb on - strand, within Psyr_5052at 5994.982 kb on - strand, within Psyr_5052at 5994.982 kb on - strand, within Psyr_5052at 5994.982 kb on - strand, within Psyr_5052at 5994.982 kb on - strand, within Psyr_5052at 5994.982 kb on - strand, within Psyr_5052at 5995.080 kb on - strand, within Psyr_5052at 5995.080 kb on - strand, within Psyr_5052at 5995.080 kb on - strand, within Psyr_5052at 5995.250 kb on + strandat 5995.312 kb on + strandat 5995.312 kb on + strandat 5995.312 kb on + strandat 5995.313 kb on - strandat 5995.313 kb on - strandat 5995.483 kb on + strand, within Psyr_5053at 5995.483 kb on + strand, within Psyr_5053at 5995.483 kb on + strand, within Psyr_5053at 5995.576 kb on + strand, within Psyr_5053at 5995.577 kb on - strand, within Psyr_5053at 5995.577 kb on - strand, within Psyr_5053at 5995.577 kb on - strand, within Psyr_5053at 5995.577 kb on - strand, within Psyr_5053at 5995.738 kb on + strand, within Psyr_5053at 5995.738 kb on + strand, within Psyr_5053at 5995.739 kb on - strand, within Psyr_5053at 5995.739 kb on - strand, within Psyr_5053at 5995.739 kb on - strand, within Psyr_5053at 5995.739 kb on - strand, within Psyr_5053at 5995.868 kb on - strand, within Psyr_5053at 5995.887 kb on + strand, within Psyr_5053at 5995.887 kb on + strand, within Psyr_5053at 5995.887 kb on + strand, within Psyr_5053at 5995.887 kb on + strand, within Psyr_5053at 5995.887 kb on + strand, within Psyr_5053at 5995.887 kb on + strand, within Psyr_5053at 5995.888 kb on - strand, within Psyr_5053at 5995.888 kb on - strand, within Psyr_5053at 5995.888 kb on - strand, within Psyr_5053at 5995.888 kb on - strand, within Psyr_5053at 5995.888 kb on - strand, within Psyr_5053at 5995.888 kb on - strand, within Psyr_5053at 5995.960 kb on - strand, within Psyr_5053at 5996.110 kb on + strand, within Psyr_5053at 5996.111 kb on - strand, within Psyr_5053at 5996.111 kb on - strand, within Psyr_5053at 5996.111 kb on - strand, within Psyr_5053at 5996.544 kb on - strand, within Psyr_5054at 5996.589 kb on + strand, within Psyr_5054at 5996.589 kb on + strand, within Psyr_5054at 5996.589 kb on + strand, within Psyr_5054at 5996.590 kb on - strand, within Psyr_5054at 5996.608 kb on + strand, within Psyr_5054at 5996.608 kb on + strand, within Psyr_5054at 5996.608 kb on + strand, within Psyr_5054at 5996.609 kb on - strand, within Psyr_5054at 5996.617 kb on + strand, within Psyr_5054at 5996.647 kb on + strand, within Psyr_5054at 5996.647 kb on + strand, within Psyr_5054at 5996.707 kb on - strand, within Psyr_5054at 5996.707 kb on - strand, within Psyr_5054at 5996.734 kb on + strand, within Psyr_5054at 5996.734 kb on + strand, within Psyr_5054at 5996.734 kb on + strand, within Psyr_5054at 5996.734 kb on + strand, within Psyr_5054at 5996.734 kb on + strand, within Psyr_5054at 5996.734 kb on + strand, within Psyr_5054at 5996.735 kb on - strand, within Psyr_5054at 5996.735 kb on - strand, within Psyr_5054at 5996.735 kb on - strand, within Psyr_5054at 5996.735 kb on - strand, within Psyr_5054at 5996.859 kb on + strand, within Psyr_5054at 5996.859 kb on + strand, within Psyr_5054at 5996.860 kb on - strand, within Psyr_5054at 5997.001 kb on + strand, within Psyr_5054at 5997.003 kb on + strand, within Psyr_5054at 5997.003 kb on + strand, within Psyr_5054at 5997.003 kb on + strand, within Psyr_5054at 5997.004 kb on - strand, within Psyr_5054at 5997.004 kb on - strand, within Psyr_5054at 5997.097 kb on - strand, within Psyr_5054at 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.162 kb on + strandat 5997.162 kb on + strandat 5997.162 kb on + strandat 5997.162 kb on + strandat 5997.163 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml
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5,994,336 + Psyr_5052 0.38 -0.9
5,994,419 + Psyr_5052 0.44 +0.5
5,994,420 - Psyr_5052 0.44 -1.2
5,994,420 - Psyr_5052 0.44 -1.9
5,994,420 - Psyr_5052 0.44 -1.4
5,994,420 - Psyr_5052 0.44 -0.4
5,994,420 - Psyr_5052 0.44 -1.4
5,994,437 + Psyr_5052 0.45 -2.2
5,994,437 + Psyr_5052 0.45 -0.7
5,994,437 + Psyr_5052 0.45 -1.2
5,994,437 + Psyr_5052 0.45 -1.5
5,994,437 + Psyr_5052 0.45 +0.1
5,994,437 + Psyr_5052 0.45 -0.4
5,994,437 + Psyr_5052 0.45 +0.6
5,994,437 + Psyr_5052 0.45 +0.0
5,994,438 - Psyr_5052 0.45 +0.5
5,994,438 - Psyr_5052 0.45 +1.2
5,994,438 - Psyr_5052 0.45 -0.7
5,994,438 - Psyr_5052 0.45 -0.7
5,994,438 - Psyr_5052 0.45 -2.7
5,994,438 - Psyr_5052 0.45 +0.6
5,994,438 - Psyr_5052 0.45 -0.3
5,994,478 + Psyr_5052 0.48 -1.7
5,994,478 + Psyr_5052 0.48 +0.0
5,994,478 + Psyr_5052 0.48 +0.1
5,994,478 + Psyr_5052 0.48 -1.0
5,994,478 + Psyr_5052 0.48 -1.6
5,994,479 - Psyr_5052 0.48 -0.5
5,994,479 - Psyr_5052 0.48 +0.5
5,994,724 + Psyr_5052 0.65 +0.5
5,994,724 + Psyr_5052 0.65 -1.0
5,994,724 + Psyr_5052 0.65 -0.4
5,994,726 + Psyr_5052 0.65 -0.4
5,994,727 - Psyr_5052 0.65 -3.4
5,994,727 - Psyr_5052 0.65 -3.2
5,994,727 - Psyr_5052 0.65 -2.7
5,994,727 - Psyr_5052 0.65 -0.7
5,994,728 + Psyr_5052 0.65 -1.0
5,994,728 + Psyr_5052 0.65 -0.4
5,994,728 + Psyr_5052 0.65 +0.4
5,994,728 + Psyr_5052 0.65 -1.2
5,994,728 + Psyr_5052 0.65 -1.9
5,994,728 + Psyr_5052 0.65 -0.5
5,994,728 + Psyr_5052 0.65 -0.7
5,994,728 + Psyr_5052 0.65 +0.3
5,994,728 + Psyr_5052 0.65 +0.3
5,994,728 + Psyr_5052 0.65 -0.8
5,994,728 + Psyr_5052 0.65 -0.7
5,994,728 + Psyr_5052 0.65 -0.4
5,994,728 + Psyr_5052 0.65 +0.2
5,994,728 + Psyr_5052 0.65 +1.6
5,994,729 - Psyr_5052 0.65 +1.3
5,994,729 - Psyr_5052 0.65 -0.9
5,994,729 - Psyr_5052 0.65 -0.7
5,994,729 - Psyr_5052 0.65 -3.1
5,994,729 - Psyr_5052 0.65 +0.2
5,994,729 - Psyr_5052 0.65 +1.7
5,994,729 - Psyr_5052 0.65 -0.8
5,994,729 - Psyr_5052 0.65 -1.5
5,994,729 - Psyr_5052 0.65 +0.3
5,994,729 - Psyr_5052 0.65 +0.3
5,994,729 - Psyr_5052 0.65 +1.3
5,994,729 - Psyr_5052 0.65 +1.1
5,994,729 - Psyr_5052 0.65 +0.7
5,994,729 - Psyr_5052 0.65 -0.2
5,994,811 + Psyr_5052 0.71 -0.2
5,994,811 + Psyr_5052 0.71 -2.1
5,994,812 - Psyr_5052 0.71 -1.2
5,994,855 - Psyr_5052 0.74 -2.0
5,994,855 - Psyr_5052 0.74 -2.0
5,994,860 + Psyr_5052 0.74 +0.8
5,994,860 + Psyr_5052 0.74 -1.7
5,994,860 + Psyr_5052 0.74 -0.9
5,994,860 + Psyr_5052 0.74 +0.9
5,994,860 + Psyr_5052 0.74 -1.5
5,994,860 + Psyr_5052 0.74 -1.1
5,994,861 - Psyr_5052 0.74 -0.0
5,994,861 - Psyr_5052 0.74 -0.7
5,994,861 - Psyr_5052 0.74 +0.5
5,994,861 - Psyr_5052 0.74 +1.2
5,994,861 - Psyr_5052 0.74 +0.3
5,994,863 + Psyr_5052 0.74 +1.6
5,994,863 + Psyr_5052 0.74 -2.2
5,994,863 + Psyr_5052 0.74 -1.3
5,994,863 + Psyr_5052 0.74 +0.0
5,994,863 + Psyr_5052 0.74 -0.9
5,994,864 - Psyr_5052 0.74 -0.0
5,994,864 - Psyr_5052 0.74 +0.2
5,994,864 - Psyr_5052 0.74 -0.5
5,994,924 - Psyr_5052 0.78 -1.0
5,994,924 - Psyr_5052 0.78 -3.1
5,994,937 - Psyr_5052 0.79 +0.7
5,994,942 + Psyr_5052 0.80 -0.4
5,994,981 + Psyr_5052 0.82 -1.8
5,994,981 + Psyr_5052 0.82 +1.2
5,994,981 + Psyr_5052 0.82 +0.7
5,994,981 + Psyr_5052 0.82 -1.8
5,994,982 - Psyr_5052 0.82 -0.4
5,994,982 - Psyr_5052 0.82 -0.1
5,994,982 - Psyr_5052 0.82 +1.6
5,994,982 - Psyr_5052 0.82 +0.9
5,994,982 - Psyr_5052 0.82 -0.3
5,994,982 - Psyr_5052 0.82 -0.5
5,994,982 - Psyr_5052 0.82 +0.3
5,994,982 - Psyr_5052 0.82 -0.1
5,995,080 - Psyr_5052 0.89 -2.4
5,995,080 - Psyr_5052 0.89 -1.6
5,995,080 - Psyr_5052 0.89 -0.6
5,995,250 + +0.2
5,995,312 + +2.5
5,995,312 + -1.2
5,995,312 + +1.0
5,995,313 - -2.7
5,995,313 - -0.7
5,995,483 + Psyr_5053 0.21 +1.1
5,995,483 + Psyr_5053 0.21 +3.7
5,995,483 + Psyr_5053 0.21 +2.0
5,995,576 + Psyr_5053 0.31 +0.3
5,995,577 - Psyr_5053 0.31 +1.6
5,995,577 - Psyr_5053 0.31 -1.7
5,995,577 - Psyr_5053 0.31 +0.3
5,995,577 - Psyr_5053 0.31 +0.6
5,995,738 + Psyr_5053 0.47 +1.7
5,995,738 + Psyr_5053 0.47 +1.6
5,995,739 - Psyr_5053 0.47 -2.2
5,995,739 - Psyr_5053 0.47 -0.6
5,995,739 - Psyr_5053 0.47 -1.0
5,995,739 - Psyr_5053 0.47 -0.3
5,995,868 - Psyr_5053 0.60 -0.2
5,995,887 + Psyr_5053 0.62 +1.5
5,995,887 + Psyr_5053 0.62 +0.1
5,995,887 + Psyr_5053 0.62 +0.3
5,995,887 + Psyr_5053 0.62 -0.5
5,995,887 + Psyr_5053 0.62 +1.2
5,995,887 + Psyr_5053 0.62 +1.5
5,995,888 - Psyr_5053 0.62 +1.1
5,995,888 - Psyr_5053 0.62 -1.5
5,995,888 - Psyr_5053 0.62 -2.4
5,995,888 - Psyr_5053 0.62 -3.0
5,995,888 - Psyr_5053 0.62 +1.3
5,995,888 - Psyr_5053 0.62 +0.2
5,995,960 - Psyr_5053 0.69 +0.1
5,996,110 + Psyr_5053 0.84 -0.5
5,996,111 - Psyr_5053 0.84 +0.8
5,996,111 - Psyr_5053 0.84 +0.8
5,996,111 - Psyr_5053 0.84 -0.0
5,996,544 - Psyr_5054 0.24 -1.7
5,996,589 + Psyr_5054 0.30 -0.1
5,996,589 + Psyr_5054 0.30 -1.7
5,996,589 + Psyr_5054 0.30 -0.7
5,996,590 - Psyr_5054 0.30 +0.4
5,996,608 + Psyr_5054 0.32 +0.9
5,996,608 + Psyr_5054 0.32 -0.4
5,996,608 + Psyr_5054 0.32 -0.4
5,996,609 - Psyr_5054 0.32 -0.2
5,996,617 + Psyr_5054 0.33 -0.7
5,996,647 + Psyr_5054 0.36 +2.1
5,996,647 + Psyr_5054 0.36 -0.4
5,996,707 - Psyr_5054 0.43 -1.1
5,996,707 - Psyr_5054 0.43 +0.1
5,996,734 + Psyr_5054 0.46 -1.0
5,996,734 + Psyr_5054 0.46 -0.7
5,996,734 + Psyr_5054 0.46 +0.2
5,996,734 + Psyr_5054 0.46 -0.2
5,996,734 + Psyr_5054 0.46 -0.2
5,996,734 + Psyr_5054 0.46 +0.6
5,996,735 - Psyr_5054 0.46 -0.9
5,996,735 - Psyr_5054 0.46 +1.6
5,996,735 - Psyr_5054 0.46 -2.7
5,996,735 - Psyr_5054 0.46 -1.4
5,996,859 + Psyr_5054 0.60 +0.1
5,996,859 + Psyr_5054 0.60 -1.7
5,996,860 - Psyr_5054 0.60 +0.3
5,997,001 + Psyr_5054 0.76 +0.7
5,997,003 + Psyr_5054 0.76 -1.5
5,997,003 + Psyr_5054 0.76 -1.1
5,997,003 + Psyr_5054 0.76 -0.4
5,997,004 - Psyr_5054 0.76 +0.2
5,997,004 - Psyr_5054 0.76 -0.2
5,997,097 - Psyr_5054 0.87 -1.0
5,997,158 + -0.2
5,997,158 + -0.5
5,997,158 + +0.0
5,997,158 + +0.0
5,997,158 + -1.0
5,997,158 + -1.0
5,997,158 + -3.5
5,997,158 + -2.8
5,997,158 + -0.8
5,997,158 + -1.5
5,997,158 + -1.6
5,997,158 + +1.1
5,997,158 + +0.6
5,997,158 + -1.0
5,997,158 + -1.2
5,997,158 + +0.6
5,997,158 + +1.3
5,997,158 + -0.7
5,997,159 - -0.5
5,997,159 - -1.5
5,997,159 - +0.8
5,997,159 - -0.2
5,997,159 - +0.0
5,997,159 - -0.4
5,997,159 - -2.3
5,997,159 - +0.5
5,997,159 - +1.7
5,997,159 - +2.3
5,997,159 - +2.1
5,997,159 - -1.5
5,997,159 - -2.0
5,997,162 + -1.7
5,997,162 + +0.8
5,997,162 + -0.5
5,997,162 + -0.8
5,997,163 - -0.2

Or see this region's nucleotide sequence