Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5047 and Psyr_5048 are separated by 9 nucleotides Psyr_5048 and Psyr_5049 are separated by 360 nucleotides
Psyr_5047: Psyr_5047 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 5,988,256 to 5,989,338
_5047
Psyr_5048: Psyr_5048 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 5,989,348 to 5,989,839
_5048
Psyr_5049: Psyr_5049 - conserved hypothetical protein, at 5,990,200 to 5,990,814
_5049
Position (kb) 5989
5990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5989.918 kb on - strand at 5989.918 kb on - strand at 5989.924 kb on - strand at 5989.958 kb on - strand at 5989.958 kb on - strand at 5989.958 kb on - strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.130 kb on - strand at 5990.130 kb on - strand at 5990.166 kb on - strand at 5990.166 kb on - strand at 5990.169 kb on + strand at 5990.196 kb on - strand at 5990.196 kb on - strand at 5990.310 kb on + strand, within Psyr_5049 at 5990.310 kb on + strand, within Psyr_5049 at 5990.310 kb on + strand, within Psyr_5049 at 5990.311 kb on - strand, within Psyr_5049 at 5990.344 kb on + strand, within Psyr_5049 at 5990.344 kb on + strand, within Psyr_5049 at 5990.344 kb on + strand, within Psyr_5049 at 5990.344 kb on + strand, within Psyr_5049 at 5990.344 kb on + strand, within Psyr_5049 at 5990.345 kb on - strand, within Psyr_5049 at 5990.345 kb on - strand, within Psyr_5049 at 5990.345 kb on - strand, within Psyr_5049 at 5990.345 kb on - strand, within Psyr_5049 at 5990.345 kb on - strand, within Psyr_5049 at 5990.345 kb on - strand, within Psyr_5049 at 5990.471 kb on - strand, within Psyr_5049 at 5990.498 kb on - strand, within Psyr_5049 at 5990.538 kb on + strand, within Psyr_5049 at 5990.538 kb on + strand, within Psyr_5049 at 5990.538 kb on + strand, within Psyr_5049 at 5990.539 kb on - strand, within Psyr_5049 at 5990.539 kb on - strand, within Psyr_5049 at 5990.539 kb on - strand, within Psyr_5049 at 5990.539 kb on - strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.562 kb on + strand, within Psyr_5049 at 5990.563 kb on - strand, within Psyr_5049 at 5990.579 kb on + strand, within Psyr_5049 at 5990.579 kb on + strand, within Psyr_5049 at 5990.579 kb on + strand, within Psyr_5049 at 5990.579 kb on + strand, within Psyr_5049 at 5990.580 kb on - strand, within Psyr_5049 at 5990.580 kb on - strand, within Psyr_5049 at 5990.633 kb on - strand, within Psyr_5049 at 5990.633 kb on - strand, within Psyr_5049 at 5990.730 kb on + strand, within Psyr_5049 at 5990.730 kb on + strand, within Psyr_5049 at 5990.730 kb on + strand, within Psyr_5049 at 5990.730 kb on + strand, within Psyr_5049 at 5990.730 kb on + strand, within Psyr_5049 at 5990.731 kb on - strand, within Psyr_5049 at 5990.731 kb on - strand, within Psyr_5049 at 5990.731 kb on - strand, within Psyr_5049 at 5990.731 kb on - strand, within Psyr_5049 at 5990.749 kb on + strand, within Psyr_5049 at 5990.749 kb on + strand, within Psyr_5049 at 5990.749 kb on + strand, within Psyr_5049 at 5990.749 kb on + strand, within Psyr_5049 at 5990.750 kb on - strand, within Psyr_5049 at 5990.750 kb on - strand, within Psyr_5049 at 5990.750 kb on - strand, within Psyr_5049 at 5990.750 kb on - strand, within Psyr_5049 at 5990.750 kb on - strand, within Psyr_5049 at 5990.752 kb on + strand, within Psyr_5049 at 5990.752 kb on + strand, within Psyr_5049 at 5990.752 kb on + strand, within Psyr_5049 at 5990.752 kb on + strand, within Psyr_5049 at 5990.752 kb on + strand, within Psyr_5049 at 5990.752 kb on + strand, within Psyr_5049 at 5990.753 kb on - strand at 5990.753 kb on - strand at 5990.753 kb on - strand at 5990.753 kb on - strand at 5990.753 kb on - strand at 5990.753 kb on - strand at 5990.788 kb on + strand at 5990.789 kb on - strand at 5990.789 kb on - strand at 5990.831 kb on + strand at 5990.832 kb on - strand at 5990.832 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 5,989,918 - +1.7 5,989,918 - +0.8 5,989,924 - +1.7 5,989,958 - +2.0 5,989,958 - +1.4 5,989,958 - +0.3 5,990,066 + +0.3 5,990,066 + +1.3 5,990,066 + -0.2 5,990,066 + -1.8 5,990,066 + +0.5 5,990,066 + -2.2 5,990,066 + +0.1 5,990,066 + -0.2 5,990,066 + -1.9 5,990,066 + -1.4 5,990,066 + +0.1 5,990,066 + -0.3 5,990,067 - +1.0 5,990,067 - -0.2 5,990,067 - -0.7 5,990,067 - +1.4 5,990,067 - +0.0 5,990,067 - -0.7 5,990,129 + +2.1 5,990,129 + -2.4 5,990,129 + -1.2 5,990,129 + +1.2 5,990,129 + -1.1 5,990,129 + -1.2 5,990,129 + -0.4 5,990,129 + -0.5 5,990,130 - -0.1 5,990,130 - +1.1 5,990,166 - +1.3 5,990,166 - +1.0 5,990,169 + -0.0 5,990,196 - +0.5 5,990,196 - +0.6 5,990,310 + Psyr_5049 0.18 +1.1 5,990,310 + Psyr_5049 0.18 +1.6 5,990,310 + Psyr_5049 0.18 -0.9 5,990,311 - Psyr_5049 0.18 +0.3 5,990,344 + Psyr_5049 0.23 -3.6 5,990,344 + Psyr_5049 0.23 -1.6 5,990,344 + Psyr_5049 0.23 -1.7 5,990,344 + Psyr_5049 0.23 -0.9 5,990,344 + Psyr_5049 0.23 +0.2 5,990,345 - Psyr_5049 0.24 +0.8 5,990,345 - Psyr_5049 0.24 +1.5 5,990,345 - Psyr_5049 0.24 +1.7 5,990,345 - Psyr_5049 0.24 +0.7 5,990,345 - Psyr_5049 0.24 -1.7 5,990,345 - Psyr_5049 0.24 -1.5 5,990,471 - Psyr_5049 0.44 -0.7 5,990,498 - Psyr_5049 0.48 -1.7 5,990,538 + Psyr_5049 0.55 +0.3 5,990,538 + Psyr_5049 0.55 -0.4 5,990,538 + Psyr_5049 0.55 -0.4 5,990,539 - Psyr_5049 0.55 +0.7 5,990,539 - Psyr_5049 0.55 -1.5 5,990,539 - Psyr_5049 0.55 +0.6 5,990,539 - Psyr_5049 0.55 +0.2 5,990,542 + Psyr_5049 0.56 +0.7 5,990,542 + Psyr_5049 0.56 +0.9 5,990,542 + Psyr_5049 0.56 +0.8 5,990,542 + Psyr_5049 0.56 +1.3 5,990,542 + Psyr_5049 0.56 +1.8 5,990,542 + Psyr_5049 0.56 -1.4 5,990,542 + Psyr_5049 0.56 +0.7 5,990,542 + Psyr_5049 0.56 -2.7 5,990,542 + Psyr_5049 0.56 +1.0 5,990,542 + Psyr_5049 0.56 +0.3 5,990,542 + Psyr_5049 0.56 -0.7 5,990,542 + Psyr_5049 0.56 -1.4 5,990,542 + Psyr_5049 0.56 -2.1 5,990,542 + Psyr_5049 0.56 +0.3 5,990,542 + Psyr_5049 0.56 -0.0 5,990,542 + Psyr_5049 0.56 +1.2 5,990,542 + Psyr_5049 0.56 -0.2 5,990,543 - Psyr_5049 0.56 +0.4 5,990,543 - Psyr_5049 0.56 +2.7 5,990,543 - Psyr_5049 0.56 +0.0 5,990,543 - Psyr_5049 0.56 -1.2 5,990,543 - Psyr_5049 0.56 +0.5 5,990,543 - Psyr_5049 0.56 +1.0 5,990,543 - Psyr_5049 0.56 +1.7 5,990,543 - Psyr_5049 0.56 -0.7 5,990,543 - Psyr_5049 0.56 +0.2 5,990,543 - Psyr_5049 0.56 +1.5 5,990,543 - Psyr_5049 0.56 +0.3 5,990,543 - Psyr_5049 0.56 -0.8 5,990,562 + Psyr_5049 0.59 +0.7 5,990,563 - Psyr_5049 0.59 -1.5 5,990,579 + Psyr_5049 0.62 -0.7 5,990,579 + Psyr_5049 0.62 -0.3 5,990,579 + Psyr_5049 0.62 +0.9 5,990,579 + Psyr_5049 0.62 -1.5 5,990,580 - Psyr_5049 0.62 -0.3 5,990,580 - Psyr_5049 0.62 +0.1 5,990,633 - Psyr_5049 0.70 -0.7 5,990,633 - Psyr_5049 0.70 +0.6 5,990,730 + Psyr_5049 0.86 -0.2 5,990,730 + Psyr_5049 0.86 +1.7 5,990,730 + Psyr_5049 0.86 +1.8 5,990,730 + Psyr_5049 0.86 -0.7 5,990,730 + Psyr_5049 0.86 -1.2 5,990,731 - Psyr_5049 0.86 +0.8 5,990,731 - Psyr_5049 0.86 +0.1 5,990,731 - Psyr_5049 0.86 -1.9 5,990,731 - Psyr_5049 0.86 +1.0 5,990,749 + Psyr_5049 0.89 -0.4 5,990,749 + Psyr_5049 0.89 -0.2 5,990,749 + Psyr_5049 0.89 +0.1 5,990,749 + Psyr_5049 0.89 +0.8 5,990,750 - Psyr_5049 0.89 -0.2 5,990,750 - Psyr_5049 0.89 +0.2 5,990,750 - Psyr_5049 0.89 -0.1 5,990,750 - Psyr_5049 0.89 -0.1 5,990,750 - Psyr_5049 0.89 -2.0 5,990,752 + Psyr_5049 0.90 +0.8 5,990,752 + Psyr_5049 0.90 +0.3 5,990,752 + Psyr_5049 0.90 -0.1 5,990,752 + Psyr_5049 0.90 +2.6 5,990,752 + Psyr_5049 0.90 +1.1 5,990,752 + Psyr_5049 0.90 +0.5 5,990,753 - -1.2 5,990,753 - -1.3 5,990,753 - -1.7 5,990,753 - -0.7 5,990,753 - -0.7 5,990,753 - -0.8 5,990,788 + +2.0 5,990,789 - +1.3 5,990,789 - +3.3 5,990,831 + -2.9 5,990,832 - +0.4 5,990,832 - +0.9
Or see this region's nucleotide sequence