Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5042 and Psyr_5043 are separated by 430 nucleotides Psyr_5043 and Psyr_5044 are separated by 91 nucleotides
Psyr_5042: Psyr_5042 - General substrate transporter:Major facilitator superfamily, at 5,983,899 to 5,985,188
_5042
Psyr_5043: Psyr_5043 - Thioesterase superfamily, at 5,985,619 to 5,986,020
_5043
Psyr_5044: Psyr_5044 - Aldose 1-epimerase, at 5,986,112 to 5,987,023
_5044
Position (kb) 5985
5986
5987 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5984.629 kb on + strand, within Psyr_5042 at 5984.629 kb on + strand, within Psyr_5042 at 5984.629 kb on + strand, within Psyr_5042 at 5984.629 kb on + strand, within Psyr_5042 at 5984.629 kb on + strand, within Psyr_5042 at 5984.629 kb on + strand, within Psyr_5042 at 5984.629 kb on + strand, within Psyr_5042 at 5984.629 kb on + strand, within Psyr_5042 at 5984.629 kb on + strand, within Psyr_5042 at 5984.630 kb on - strand, within Psyr_5042 at 5984.630 kb on - strand, within Psyr_5042 at 5984.630 kb on - strand, within Psyr_5042 at 5984.630 kb on - strand, within Psyr_5042 at 5984.630 kb on - strand, within Psyr_5042 at 5984.630 kb on - strand, within Psyr_5042 at 5984.630 kb on - strand, within Psyr_5042 at 5984.630 kb on - strand, within Psyr_5042 at 5984.630 kb on - strand, within Psyr_5042 at 5984.630 kb on - strand, within Psyr_5042 at 5984.842 kb on + strand, within Psyr_5042 at 5984.843 kb on - strand, within Psyr_5042 at 5984.972 kb on - strand, within Psyr_5042 at 5985.085 kb on + strand at 5985.086 kb on - strand at 5985.086 kb on - strand at 5985.086 kb on - strand at 5985.204 kb on + strand at 5985.204 kb on + strand at 5985.204 kb on + strand at 5985.205 kb on - strand at 5985.205 kb on - strand at 5985.205 kb on - strand at 5985.294 kb on - strand at 5985.294 kb on - strand at 5985.312 kb on + strand at 5985.312 kb on + strand at 5985.333 kb on + strand at 5985.333 kb on + strand at 5985.334 kb on - strand at 5985.334 kb on - strand at 5985.334 kb on - strand at 5985.417 kb on + strand at 5985.417 kb on + strand at 5985.417 kb on + strand at 5985.418 kb on - strand at 5985.418 kb on - strand at 5985.436 kb on + strand at 5985.436 kb on + strand at 5985.436 kb on + strand at 5985.436 kb on + strand at 5985.437 kb on - strand at 5985.535 kb on + strand at 5985.535 kb on + strand at 5985.535 kb on + strand at 5985.535 kb on + strand at 5985.535 kb on + strand at 5985.535 kb on + strand at 5985.535 kb on + strand at 5985.535 kb on + strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.536 kb on - strand at 5985.581 kb on + strand at 5985.581 kb on + strand at 5985.581 kb on + strand at 5985.581 kb on + strand at 5985.581 kb on + strand at 5985.581 kb on + strand at 5985.582 kb on - strand at 5985.582 kb on - strand at 5985.582 kb on - strand at 5985.582 kb on - strand at 5985.582 kb on - strand at 5985.582 kb on - strand at 5985.582 kb on - strand at 5985.582 kb on - strand at 5985.582 kb on - strand at 5985.614 kb on + strand at 5985.856 kb on + strand, within Psyr_5043 at 5985.857 kb on - strand, within Psyr_5043 at 5985.857 kb on - strand, within Psyr_5043 at 5985.977 kb on + strand, within Psyr_5043 at 5985.977 kb on + strand, within Psyr_5043 at 5985.977 kb on + strand, within Psyr_5043 at 5985.978 kb on - strand, within Psyr_5043 at 5985.978 kb on - strand, within Psyr_5043 at 5985.978 kb on - strand, within Psyr_5043 at 5985.978 kb on - strand, within Psyr_5043 at 5985.978 kb on - strand, within Psyr_5043 at 5985.978 kb on - strand, within Psyr_5043 at 5985.978 kb on - strand, within Psyr_5043 at 5985.978 kb on - strand, within Psyr_5043 at 5985.978 kb on - strand, within Psyr_5043 at 5985.978 kb on - strand, within Psyr_5043 at 5986.054 kb on - strand at 5986.078 kb on + strand at 5986.079 kb on - strand at 5986.154 kb on + strand at 5986.155 kb on - strand at 5986.177 kb on + strand at 5986.177 kb on + strand at 5986.178 kb on - strand at 5986.178 kb on - strand at 5986.178 kb on - strand at 5986.235 kb on + strand, within Psyr_5044 at 5986.235 kb on + strand, within Psyr_5044 at 5986.235 kb on + strand, within Psyr_5044 at 5986.236 kb on - strand, within Psyr_5044 at 5986.583 kb on + strand, within Psyr_5044 at 5986.583 kb on + strand, within Psyr_5044 at 5986.583 kb on + strand, within Psyr_5044 at 5986.583 kb on + strand, within Psyr_5044 at 5986.584 kb on - strand, within Psyr_5044 at 5986.605 kb on + strand, within Psyr_5044 at 5986.606 kb on - strand, within Psyr_5044 at 5986.631 kb on + strand, within Psyr_5044 at 5986.631 kb on + strand, within Psyr_5044 at 5986.631 kb on + strand, within Psyr_5044 at 5986.631 kb on + strand, within Psyr_5044 at 5986.631 kb on + strand, within Psyr_5044 at 5986.632 kb on - strand, within Psyr_5044 at 5986.632 kb on - strand, within Psyr_5044 at 5986.632 kb on - strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.651 kb on - strand, within Psyr_5044 at 5986.651 kb on - strand, within Psyr_5044 at 5986.651 kb on - strand, within Psyr_5044 at 5986.651 kb on - strand, within Psyr_5044 at 5986.689 kb on - strand, within Psyr_5044 at 5986.689 kb on - strand, within Psyr_5044 at 5986.689 kb on - strand, within Psyr_5044 at 5986.766 kb on + strand, within Psyr_5044 at 5986.766 kb on + strand, within Psyr_5044 at 5986.767 kb on - strand, within Psyr_5044 at 5986.767 kb on - strand, within Psyr_5044 at 5986.767 kb on - strand, within Psyr_5044 at 5986.767 kb on - strand, within Psyr_5044 at 5987.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 5,984,629 + Psyr_5042 0.57 -0.7 5,984,629 + Psyr_5042 0.57 -1.4 5,984,629 + Psyr_5042 0.57 +0.9 5,984,629 + Psyr_5042 0.57 -0.2 5,984,629 + Psyr_5042 0.57 -0.2 5,984,629 + Psyr_5042 0.57 -1.1 5,984,629 + Psyr_5042 0.57 +0.1 5,984,629 + Psyr_5042 0.57 +0.2 5,984,629 + Psyr_5042 0.57 -0.0 5,984,630 - Psyr_5042 0.57 +0.5 5,984,630 - Psyr_5042 0.57 -1.2 5,984,630 - Psyr_5042 0.57 +0.8 5,984,630 - Psyr_5042 0.57 -0.2 5,984,630 - Psyr_5042 0.57 -0.9 5,984,630 - Psyr_5042 0.57 +0.2 5,984,630 - Psyr_5042 0.57 +0.6 5,984,630 - Psyr_5042 0.57 -0.2 5,984,630 - Psyr_5042 0.57 -1.0 5,984,630 - Psyr_5042 0.57 +0.1 5,984,842 + Psyr_5042 0.73 -0.0 5,984,843 - Psyr_5042 0.73 +0.1 5,984,972 - Psyr_5042 0.83 -1.6 5,985,085 + +2.2 5,985,086 - -1.3 5,985,086 - -0.1 5,985,086 - -0.2 5,985,204 + +0.5 5,985,204 + -0.4 5,985,204 + -1.2 5,985,205 - -0.0 5,985,205 - -2.8 5,985,205 - -1.7 5,985,294 - -0.2 5,985,294 - +1.6 5,985,312 + +0.8 5,985,312 + -0.2 5,985,333 + -0.6 5,985,333 + -1.2 5,985,334 - -1.4 5,985,334 - -0.7 5,985,334 - -2.4 5,985,417 + +1.0 5,985,417 + +0.3 5,985,417 + +0.3 5,985,418 - -3.5 5,985,418 - -3.2 5,985,436 + +0.0 5,985,436 + -1.5 5,985,436 + +0.0 5,985,436 + +1.9 5,985,437 - -1.1 5,985,535 + -1.5 5,985,535 + -1.1 5,985,535 + +0.0 5,985,535 + +0.2 5,985,535 + -0.1 5,985,535 + -0.2 5,985,535 + -0.2 5,985,535 + +1.1 5,985,536 - -0.2 5,985,536 - -0.7 5,985,536 - -2.2 5,985,536 - -1.0 5,985,536 - +1.2 5,985,536 - +1.0 5,985,536 - -0.6 5,985,536 - -0.2 5,985,536 - -2.7 5,985,536 - -0.9 5,985,536 - -0.7 5,985,536 - -0.9 5,985,536 - -0.8 5,985,536 - +0.3 5,985,536 - -3.7 5,985,536 - -3.1 5,985,536 - +0.1 5,985,581 + +1.7 5,985,581 + -2.0 5,985,581 + +3.2 5,985,581 + +0.7 5,985,581 + -0.0 5,985,581 + +1.3 5,985,582 - -1.4 5,985,582 - +0.3 5,985,582 - -0.8 5,985,582 - -1.8 5,985,582 - +0.3 5,985,582 - -1.5 5,985,582 - -0.7 5,985,582 - -1.3 5,985,582 - -0.6 5,985,614 + -3.2 5,985,856 + Psyr_5043 0.59 -0.2 5,985,857 - Psyr_5043 0.59 -2.8 5,985,857 - Psyr_5043 0.59 -1.2 5,985,977 + Psyr_5043 0.89 -1.2 5,985,977 + Psyr_5043 0.89 +0.2 5,985,977 + Psyr_5043 0.89 -3.0 5,985,978 - Psyr_5043 0.89 -2.2 5,985,978 - Psyr_5043 0.89 -4.0 5,985,978 - Psyr_5043 0.89 +0.8 5,985,978 - Psyr_5043 0.89 -2.2 5,985,978 - Psyr_5043 0.89 -0.2 5,985,978 - Psyr_5043 0.89 +0.1 5,985,978 - Psyr_5043 0.89 -1.8 5,985,978 - Psyr_5043 0.89 -0.1 5,985,978 - Psyr_5043 0.89 -1.0 5,985,978 - Psyr_5043 0.89 -1.0 5,986,054 - -0.0 5,986,078 + -1.9 5,986,079 - +0.0 5,986,154 + +0.6 5,986,155 - -0.4 5,986,177 + -0.7 5,986,177 + -0.4 5,986,178 - -0.6 5,986,178 - -1.0 5,986,178 - -2.1 5,986,235 + Psyr_5044 0.13 -0.9 5,986,235 + Psyr_5044 0.13 +1.8 5,986,235 + Psyr_5044 0.13 +0.3 5,986,236 - Psyr_5044 0.14 -2.7 5,986,583 + Psyr_5044 0.52 -0.4 5,986,583 + Psyr_5044 0.52 -0.7 5,986,583 + Psyr_5044 0.52 +1.3 5,986,583 + Psyr_5044 0.52 -1.2 5,986,584 - Psyr_5044 0.52 -0.3 5,986,605 + Psyr_5044 0.54 -1.0 5,986,606 - Psyr_5044 0.54 +0.4 5,986,631 + Psyr_5044 0.57 +0.4 5,986,631 + Psyr_5044 0.57 +1.3 5,986,631 + Psyr_5044 0.57 -0.2 5,986,631 + Psyr_5044 0.57 +0.6 5,986,631 + Psyr_5044 0.57 +0.1 5,986,632 - Psyr_5044 0.57 -0.5 5,986,632 - Psyr_5044 0.57 +0.5 5,986,632 - Psyr_5044 0.57 -1.2 5,986,650 + Psyr_5044 0.59 +0.1 5,986,650 + Psyr_5044 0.59 +1.1 5,986,650 + Psyr_5044 0.59 -2.0 5,986,650 + Psyr_5044 0.59 +0.3 5,986,650 + Psyr_5044 0.59 -1.1 5,986,650 + Psyr_5044 0.59 +1.7 5,986,650 + Psyr_5044 0.59 +1.3 5,986,650 + Psyr_5044 0.59 -0.8 5,986,651 - Psyr_5044 0.59 -2.2 5,986,651 - Psyr_5044 0.59 -0.2 5,986,651 - Psyr_5044 0.59 +0.8 5,986,651 - Psyr_5044 0.59 -0.7 5,986,689 - Psyr_5044 0.63 -0.7 5,986,689 - Psyr_5044 0.63 +0.5 5,986,689 - Psyr_5044 0.63 +3.3 5,986,766 + Psyr_5044 0.72 +0.4 5,986,766 + Psyr_5044 0.72 +0.0 5,986,767 - Psyr_5044 0.72 -0.5 5,986,767 - Psyr_5044 0.72 +2.3 5,986,767 - Psyr_5044 0.72 -0.2 5,986,767 - Psyr_5044 0.72 -3.0 5,987,002 + -1.5
Or see this region's nucleotide sequence