Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4924 and Psyr_4925 are separated by 144 nucleotides Psyr_4925 and Psyr_4926 are separated by 11 nucleotides Psyr_4926 and Psyr_4927 are separated by 94 nucleotides Psyr_4927 and Psyr_4928 are separated by 43 nucleotides
Psyr_4924: Psyr_4924 - Protein of unknown function DUF450, at 5,838,180 to 5,839,265
_4924
Psyr_4925: Psyr_4925 - conserved hypothetical protein, at 5,839,410 to 5,840,147
_4925
Psyr_4926: Psyr_4926 - GCN5-related N-acetyltransferase, at 5,840,159 to 5,840,632
_4926
Psyr_4927: Psyr_4927 - ATP-dependent DNA helicase recG, at 5,840,727 to 5,841,323
_4927
Psyr_4928: Psyr_4928 - conserved hypothetical protein, at 5,841,367 to 5,841,954
_4928
Position (kb) 5840
5841 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5839.208 kb on + strand at 5839.208 kb on + strand at 5839.209 kb on - strand at 5839.209 kb on - strand at 5839.209 kb on - strand at 5839.212 kb on + strand at 5839.212 kb on + strand at 5839.213 kb on - strand at 5839.252 kb on - strand at 5839.274 kb on + strand at 5839.274 kb on + strand at 5839.274 kb on + strand at 5839.274 kb on + strand at 5839.275 kb on - strand at 5839.275 kb on - strand at 5839.275 kb on - strand at 5839.275 kb on - strand at 5839.317 kb on - strand at 5839.317 kb on - strand at 5839.327 kb on - strand at 5839.383 kb on - strand at 5839.383 kb on - strand at 5839.416 kb on - strand at 5839.416 kb on - strand at 5839.607 kb on + strand, within Psyr_4925 at 5839.615 kb on + strand, within Psyr_4925 at 5839.616 kb on - strand, within Psyr_4925 at 5839.616 kb on - strand, within Psyr_4925 at 5839.616 kb on - strand, within Psyr_4925 at 5839.664 kb on + strand, within Psyr_4925 at 5839.835 kb on + strand, within Psyr_4925 at 5839.835 kb on + strand, within Psyr_4925 at 5839.835 kb on + strand, within Psyr_4925 at 5839.835 kb on + strand, within Psyr_4925 at 5839.835 kb on + strand, within Psyr_4925 at 5839.835 kb on + strand, within Psyr_4925 at 5839.835 kb on + strand, within Psyr_4925 at 5839.835 kb on + strand, within Psyr_4925 at 5839.836 kb on - strand, within Psyr_4925 at 5839.836 kb on - strand, within Psyr_4925 at 5839.836 kb on - strand, within Psyr_4925 at 5839.836 kb on - strand, within Psyr_4925 at 5839.836 kb on - strand, within Psyr_4925 at 5839.836 kb on - strand, within Psyr_4925 at 5839.836 kb on - strand, within Psyr_4925 at 5839.836 kb on - strand, within Psyr_4925 at 5839.836 kb on - strand, within Psyr_4925 at 5839.836 kb on - strand, within Psyr_4925 at 5839.878 kb on - strand, within Psyr_4925 at 5839.936 kb on - strand, within Psyr_4925 at 5839.936 kb on - strand, within Psyr_4925 at 5839.936 kb on - strand, within Psyr_4925 at 5839.948 kb on - strand, within Psyr_4925 at 5840.000 kb on + strand, within Psyr_4925 at 5840.065 kb on - strand, within Psyr_4925 at 5840.190 kb on + strand at 5840.190 kb on + strand at 5840.191 kb on - strand at 5840.191 kb on - strand at 5840.193 kb on + strand at 5840.193 kb on + strand at 5840.193 kb on + strand at 5840.193 kb on + strand at 5840.193 kb on + strand at 5840.193 kb on + strand at 5840.193 kb on + strand at 5840.193 kb on + strand at 5840.193 kb on + strand at 5840.193 kb on + strand at 5840.193 kb on + strand at 5840.193 kb on + strand at 5840.194 kb on - strand at 5840.194 kb on - strand at 5840.194 kb on - strand at 5840.194 kb on - strand at 5840.194 kb on - strand at 5840.194 kb on - strand at 5840.241 kb on + strand, within Psyr_4926 at 5840.241 kb on + strand, within Psyr_4926 at 5840.241 kb on + strand, within Psyr_4926 at 5840.241 kb on + strand, within Psyr_4926 at 5840.242 kb on - strand, within Psyr_4926 at 5840.242 kb on - strand, within Psyr_4926 at 5840.242 kb on - strand, within Psyr_4926 at 5840.242 kb on - strand, within Psyr_4926 at 5840.242 kb on - strand, within Psyr_4926 at 5840.282 kb on + strand, within Psyr_4926 at 5840.282 kb on + strand, within Psyr_4926 at 5840.282 kb on + strand, within Psyr_4926 at 5840.283 kb on - strand, within Psyr_4926 at 5840.370 kb on + strand, within Psyr_4926 at 5840.370 kb on + strand, within Psyr_4926 at 5840.370 kb on + strand, within Psyr_4926 at 5840.370 kb on + strand, within Psyr_4926 at 5840.370 kb on + strand, within Psyr_4926 at 5840.370 kb on + strand, within Psyr_4926 at 5840.370 kb on + strand, within Psyr_4926 at 5840.371 kb on - strand, within Psyr_4926 at 5840.371 kb on - strand, within Psyr_4926 at 5840.371 kb on - strand, within Psyr_4926 at 5840.371 kb on - strand, within Psyr_4926 at 5840.371 kb on - strand, within Psyr_4926 at 5840.371 kb on - strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.448 kb on + strand, within Psyr_4926 at 5840.449 kb on - strand, within Psyr_4926 at 5840.449 kb on - strand, within Psyr_4926 at 5840.449 kb on - strand, within Psyr_4926 at 5840.449 kb on - strand, within Psyr_4926 at 5840.449 kb on - strand, within Psyr_4926 at 5840.449 kb on - strand, within Psyr_4926 at 5840.449 kb on - strand, within Psyr_4926 at 5840.548 kb on + strand, within Psyr_4926 at 5840.548 kb on + strand, within Psyr_4926 at 5840.549 kb on - strand, within Psyr_4926 at 5840.549 kb on - strand, within Psyr_4926 at 5840.549 kb on - strand, within Psyr_4926 at 5840.549 kb on - strand, within Psyr_4926 at 5840.549 kb on - strand, within Psyr_4926 at 5840.552 kb on + strand, within Psyr_4926 at 5840.552 kb on + strand, within Psyr_4926 at 5840.552 kb on + strand, within Psyr_4926 at 5840.552 kb on + strand, within Psyr_4926 at 5840.553 kb on - strand, within Psyr_4926 at 5840.553 kb on - strand, within Psyr_4926 at 5840.553 kb on - strand, within Psyr_4926 at 5840.553 kb on - strand, within Psyr_4926 at 5840.553 kb on - strand, within Psyr_4926 at 5840.553 kb on - strand, within Psyr_4926 at 5840.553 kb on - strand, within Psyr_4926 at 5840.554 kb on - strand, within Psyr_4926 at 5840.694 kb on + strand at 5840.694 kb on + strand at 5840.694 kb on + strand at 5840.694 kb on + strand at 5840.695 kb on - strand at 5840.695 kb on - strand at 5840.695 kb on - strand at 5840.747 kb on + strand at 5840.748 kb on - strand at 5840.855 kb on - strand, within Psyr_4927 at 5840.928 kb on + strand, within Psyr_4927 at 5840.928 kb on + strand, within Psyr_4927 at 5841.033 kb on - strand, within Psyr_4927 at 5841.034 kb on + strand, within Psyr_4927 at 5841.035 kb on - strand, within Psyr_4927 at 5841.080 kb on + strand, within Psyr_4927 at 5841.080 kb on + strand, within Psyr_4927 at 5841.080 kb on + strand, within Psyr_4927 at 5841.080 kb on + strand, within Psyr_4927 at 5841.080 kb on + strand, within Psyr_4927 at 5841.080 kb on + strand, within Psyr_4927 at 5841.080 kb on + strand, within Psyr_4927 at 5841.080 kb on + strand, within Psyr_4927 at 5841.080 kb on + strand, within Psyr_4927 at 5841.080 kb on + strand, within Psyr_4927 at 5841.081 kb on - strand, within Psyr_4927 at 5841.081 kb on - strand, within Psyr_4927 at 5841.081 kb on - strand, within Psyr_4927 at 5841.081 kb on - strand, within Psyr_4927 at 5841.081 kb on - strand, within Psyr_4927 at 5841.084 kb on + strand, within Psyr_4927 at 5841.084 kb on + strand, within Psyr_4927 at 5841.084 kb on + strand, within Psyr_4927 at 5841.084 kb on + strand, within Psyr_4927 at 5841.084 kb on + strand, within Psyr_4927 at 5841.084 kb on + strand, within Psyr_4927 at 5841.085 kb on - strand, within Psyr_4927 at 5841.085 kb on - strand, within Psyr_4927 at 5841.085 kb on - strand, within Psyr_4927 at 5841.085 kb on - strand, within Psyr_4927 at 5841.085 kb on - strand, within Psyr_4927 at 5841.111 kb on - strand, within Psyr_4927 at 5841.112 kb on + strand, within Psyr_4927 at 5841.112 kb on + strand, within Psyr_4927 at 5841.112 kb on + strand, within Psyr_4927 at 5841.112 kb on + strand, within Psyr_4927 at 5841.112 kb on + strand, within Psyr_4927 at 5841.112 kb on + strand, within Psyr_4927 at 5841.113 kb on - strand, within Psyr_4927 at 5841.113 kb on - strand, within Psyr_4927 at 5841.113 kb on - strand, within Psyr_4927 at 5841.113 kb on - strand, within Psyr_4927 at 5841.120 kb on + strand, within Psyr_4927 at 5841.120 kb on + strand, within Psyr_4927 at 5841.124 kb on + strand, within Psyr_4927 at 5841.125 kb on - strand, within Psyr_4927 at 5841.140 kb on + strand, within Psyr_4927 at 5841.141 kb on - strand, within Psyr_4927 at 5841.164 kb on + strand, within Psyr_4927 at 5841.164 kb on + strand, within Psyr_4927 at 5841.165 kb on - strand, within Psyr_4927 at 5841.165 kb on - strand, within Psyr_4927 at 5841.249 kb on + strand, within Psyr_4927 at 5841.250 kb on - strand, within Psyr_4927 at 5841.250 kb on - strand, within Psyr_4927 at 5841.250 kb on - strand, within Psyr_4927 at 5841.250 kb on - strand, within Psyr_4927 at 5841.277 kb on + strand at 5841.277 kb on + strand at 5841.277 kb on + strand at 5841.278 kb on - strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.316 kb on - strand at 5841.316 kb on - strand at 5841.316 kb on - strand at 5841.318 kb on - strand at 5841.318 kb on - strand at 5841.339 kb on + strand at 5841.340 kb on - strand at 5841.340 kb on - strand at 5841.369 kb on - strand at 5841.390 kb on - strand at 5841.397 kb on + strand at 5841.611 kb on + strand, within Psyr_4928 at 5841.612 kb on - strand, within Psyr_4928
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 5,839,208 + -0.8 5,839,208 + -1.2 5,839,209 - -0.4 5,839,209 - +0.8 5,839,209 - -1.7 5,839,212 + +1.9 5,839,212 + +2.3 5,839,213 - -0.6 5,839,252 - -0.2 5,839,274 + +1.1 5,839,274 + -0.1 5,839,274 + +0.3 5,839,274 + +1.3 5,839,275 - +0.2 5,839,275 - -0.9 5,839,275 - +0.8 5,839,275 - -1.5 5,839,317 - +0.7 5,839,317 - -2.4 5,839,327 - -0.1 5,839,383 - -1.7 5,839,383 - +0.2 5,839,416 - +0.1 5,839,416 - -0.5 5,839,607 + Psyr_4925 0.27 +0.5 5,839,615 + Psyr_4925 0.28 -0.7 5,839,616 - Psyr_4925 0.28 -3.3 5,839,616 - Psyr_4925 0.28 -1.2 5,839,616 - Psyr_4925 0.28 +0.4 5,839,664 + Psyr_4925 0.34 +0.3 5,839,835 + Psyr_4925 0.58 +1.2 5,839,835 + Psyr_4925 0.58 -0.3 5,839,835 + Psyr_4925 0.58 -1.4 5,839,835 + Psyr_4925 0.58 +1.9 5,839,835 + Psyr_4925 0.58 +0.7 5,839,835 + Psyr_4925 0.58 -1.5 5,839,835 + Psyr_4925 0.58 +0.3 5,839,835 + Psyr_4925 0.58 +0.5 5,839,836 - Psyr_4925 0.58 -0.9 5,839,836 - Psyr_4925 0.58 -0.8 5,839,836 - Psyr_4925 0.58 -2.1 5,839,836 - Psyr_4925 0.58 +0.3 5,839,836 - Psyr_4925 0.58 -2.1 5,839,836 - Psyr_4925 0.58 -0.2 5,839,836 - Psyr_4925 0.58 -1.7 5,839,836 - Psyr_4925 0.58 -0.2 5,839,836 - Psyr_4925 0.58 +0.7 5,839,836 - Psyr_4925 0.58 +0.9 5,839,878 - Psyr_4925 0.63 -0.5 5,839,936 - Psyr_4925 0.71 -1.2 5,839,936 - Psyr_4925 0.71 -0.1 5,839,936 - Psyr_4925 0.71 -0.3 5,839,948 - Psyr_4925 0.73 +0.1 5,840,000 + Psyr_4925 0.80 -0.9 5,840,065 - Psyr_4925 0.89 -0.7 5,840,190 + +0.6 5,840,190 + +0.5 5,840,191 - +0.5 5,840,191 - -2.3 5,840,193 + -1.9 5,840,193 + -0.6 5,840,193 + +0.5 5,840,193 + +0.7 5,840,193 + -1.2 5,840,193 + +1.5 5,840,193 + +0.3 5,840,193 + +1.5 5,840,193 + +0.3 5,840,193 + +0.3 5,840,193 + +0.2 5,840,193 + +1.2 5,840,194 - -1.7 5,840,194 - -0.4 5,840,194 - -2.7 5,840,194 - +0.3 5,840,194 - -0.1 5,840,194 - -0.7 5,840,241 + Psyr_4926 0.17 +3.3 5,840,241 + Psyr_4926 0.17 -0.5 5,840,241 + Psyr_4926 0.17 -2.0 5,840,241 + Psyr_4926 0.17 +0.7 5,840,242 - Psyr_4926 0.18 -3.2 5,840,242 - Psyr_4926 0.18 -0.8 5,840,242 - Psyr_4926 0.18 -0.1 5,840,242 - Psyr_4926 0.18 -0.5 5,840,242 - Psyr_4926 0.18 -0.4 5,840,282 + Psyr_4926 0.26 +0.3 5,840,282 + Psyr_4926 0.26 +0.4 5,840,282 + Psyr_4926 0.26 -0.2 5,840,283 - Psyr_4926 0.26 -1.0 5,840,370 + Psyr_4926 0.45 -1.4 5,840,370 + Psyr_4926 0.45 +0.7 5,840,370 + Psyr_4926 0.45 -0.1 5,840,370 + Psyr_4926 0.45 -0.6 5,840,370 + Psyr_4926 0.45 -0.2 5,840,370 + Psyr_4926 0.45 -1.3 5,840,370 + Psyr_4926 0.45 -0.2 5,840,371 - Psyr_4926 0.45 +0.7 5,840,371 - Psyr_4926 0.45 -2.2 5,840,371 - Psyr_4926 0.45 +1.3 5,840,371 - Psyr_4926 0.45 -1.8 5,840,371 - Psyr_4926 0.45 -0.2 5,840,371 - Psyr_4926 0.45 +1.3 5,840,448 + Psyr_4926 0.61 +0.3 5,840,448 + Psyr_4926 0.61 -2.0 5,840,448 + Psyr_4926 0.61 +0.3 5,840,448 + Psyr_4926 0.61 +1.1 5,840,448 + Psyr_4926 0.61 +0.3 5,840,448 + Psyr_4926 0.61 -1.5 5,840,448 + Psyr_4926 0.61 +0.1 5,840,448 + Psyr_4926 0.61 +0.8 5,840,448 + Psyr_4926 0.61 -2.4 5,840,448 + Psyr_4926 0.61 +0.4 5,840,448 + Psyr_4926 0.61 +1.2 5,840,448 + Psyr_4926 0.61 -2.1 5,840,448 + Psyr_4926 0.61 -0.7 5,840,448 + Psyr_4926 0.61 +0.2 5,840,449 - Psyr_4926 0.61 -1.1 5,840,449 - Psyr_4926 0.61 -0.8 5,840,449 - Psyr_4926 0.61 -1.6 5,840,449 - Psyr_4926 0.61 +2.3 5,840,449 - Psyr_4926 0.61 -1.5 5,840,449 - Psyr_4926 0.61 -3.4 5,840,449 - Psyr_4926 0.61 -1.1 5,840,548 + Psyr_4926 0.82 -0.5 5,840,548 + Psyr_4926 0.82 +0.1 5,840,549 - Psyr_4926 0.82 +0.8 5,840,549 - Psyr_4926 0.82 -1.5 5,840,549 - Psyr_4926 0.82 +0.0 5,840,549 - Psyr_4926 0.82 +0.3 5,840,549 - Psyr_4926 0.82 +0.0 5,840,552 + Psyr_4926 0.83 +1.3 5,840,552 + Psyr_4926 0.83 -1.1 5,840,552 + Psyr_4926 0.83 -0.0 5,840,552 + Psyr_4926 0.83 -0.0 5,840,553 - Psyr_4926 0.83 +0.2 5,840,553 - Psyr_4926 0.83 +0.1 5,840,553 - Psyr_4926 0.83 -0.3 5,840,553 - Psyr_4926 0.83 -0.5 5,840,553 - Psyr_4926 0.83 -1.7 5,840,553 - Psyr_4926 0.83 -0.7 5,840,553 - Psyr_4926 0.83 +1.0 5,840,554 - Psyr_4926 0.83 -2.3 5,840,694 + -1.2 5,840,694 + -0.1 5,840,694 + -0.3 5,840,694 + +0.2 5,840,695 - -1.2 5,840,695 - -0.7 5,840,695 - -2.7 5,840,747 + -0.0 5,840,748 - -0.2 5,840,855 - Psyr_4927 0.21 +0.6 5,840,928 + Psyr_4927 0.34 -1.5 5,840,928 + Psyr_4927 0.34 -1.0 5,841,033 - Psyr_4927 0.51 +0.3 5,841,034 + Psyr_4927 0.51 +0.1 5,841,035 - Psyr_4927 0.52 -0.9 5,841,080 + Psyr_4927 0.59 -0.5 5,841,080 + Psyr_4927 0.59 -3.5 5,841,080 + Psyr_4927 0.59 -1.0 5,841,080 + Psyr_4927 0.59 -2.1 5,841,080 + Psyr_4927 0.59 +1.5 5,841,080 + Psyr_4927 0.59 -1.5 5,841,080 + Psyr_4927 0.59 +0.5 5,841,080 + Psyr_4927 0.59 -2.6 5,841,080 + Psyr_4927 0.59 +0.5 5,841,080 + Psyr_4927 0.59 -0.6 5,841,081 - Psyr_4927 0.59 -0.1 5,841,081 - Psyr_4927 0.59 -1.5 5,841,081 - Psyr_4927 0.59 -0.7 5,841,081 - Psyr_4927 0.59 -3.0 5,841,081 - Psyr_4927 0.59 -0.1 5,841,084 + Psyr_4927 0.60 -0.3 5,841,084 + Psyr_4927 0.60 -0.8 5,841,084 + Psyr_4927 0.60 -3.0 5,841,084 + Psyr_4927 0.60 -0.8 5,841,084 + Psyr_4927 0.60 -3.0 5,841,084 + Psyr_4927 0.60 -0.7 5,841,085 - Psyr_4927 0.60 -1.5 5,841,085 - Psyr_4927 0.60 +0.0 5,841,085 - Psyr_4927 0.60 +1.3 5,841,085 - Psyr_4927 0.60 -1.2 5,841,085 - Psyr_4927 0.60 -1.2 5,841,111 - Psyr_4927 0.64 +0.1 5,841,112 + Psyr_4927 0.64 -0.2 5,841,112 + Psyr_4927 0.64 -0.8 5,841,112 + Psyr_4927 0.64 -1.0 5,841,112 + Psyr_4927 0.64 -1.2 5,841,112 + Psyr_4927 0.64 -0.4 5,841,112 + Psyr_4927 0.64 -1.0 5,841,113 - Psyr_4927 0.65 -0.7 5,841,113 - Psyr_4927 0.65 -0.5 5,841,113 - Psyr_4927 0.65 -2.4 5,841,113 - Psyr_4927 0.65 -1.5 5,841,120 + Psyr_4927 0.66 -0.2 5,841,120 + Psyr_4927 0.66 +1.5 5,841,124 + Psyr_4927 0.66 -1.4 5,841,125 - Psyr_4927 0.67 -3.3 5,841,140 + Psyr_4927 0.69 -1.2 5,841,141 - Psyr_4927 0.69 -2.0 5,841,164 + Psyr_4927 0.73 +2.5 5,841,164 + Psyr_4927 0.73 -0.9 5,841,165 - Psyr_4927 0.73 -0.8 5,841,165 - Psyr_4927 0.73 -0.7 5,841,249 + Psyr_4927 0.87 -0.4 5,841,250 - Psyr_4927 0.88 -0.6 5,841,250 - Psyr_4927 0.88 -0.5 5,841,250 - Psyr_4927 0.88 -0.1 5,841,250 - Psyr_4927 0.88 -1.3 5,841,277 + -2.0 5,841,277 + -2.7 5,841,277 + -1.8 5,841,278 - -0.7 5,841,315 + -1.7 5,841,315 + -0.1 5,841,315 + +0.3 5,841,315 + -2.7 5,841,315 + -1.4 5,841,315 + -0.5 5,841,315 + -1.4 5,841,315 + -1.1 5,841,315 + -1.2 5,841,315 + +0.3 5,841,315 + +0.1 5,841,315 + +0.4 5,841,315 + +0.5 5,841,316 - -2.0 5,841,316 - -1.0 5,841,316 - -1.2 5,841,318 - -1.7 5,841,318 - -1.5 5,841,339 + -1.1 5,841,340 - -0.7 5,841,340 - -0.3 5,841,369 - -2.5 5,841,390 - -0.0 5,841,397 + -1.3 5,841,611 + Psyr_4928 0.41 +0.8 5,841,612 - Psyr_4928 0.42 +0.1
Or see this region's nucleotide sequence