Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4907 and Psyr_4908 are separated by 143 nucleotides Psyr_4908 and Psyr_4909 are separated by 57 nucleotides Psyr_4909 and Psyr_4910 are separated by 39 nucleotides Psyr_4910 and Psyr_4911 are separated by 372 nucleotides
Psyr_4907: Psyr_4907 - PAS, at 5,819,521 to 5,820,867
_4907
Psyr_4908: Psyr_4908 - conserved hypothetical protein, at 5,821,011 to 5,821,496
_4908
Psyr_4909: Psyr_4909 - gamma-aminobutyrate:proton symporter, AAT family, at 5,821,554 to 5,822,945
_4909
Psyr_4910: Psyr_4910 - hypothetical protein, at 5,822,985 to 5,823,242
_4910
Psyr_4911: Psyr_4911 - amino acid ABC transporter ATP-binding protein, PAAT family, at 5,823,615 to 5,824,388
_4911
Position (kb) 5821
5822
5823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5820.624 kb on + strand, within Psyr_4907 at 5820.624 kb on + strand, within Psyr_4907 at 5820.624 kb on + strand, within Psyr_4907 at 5820.625 kb on - strand, within Psyr_4907 at 5820.625 kb on - strand, within Psyr_4907 at 5820.625 kb on - strand, within Psyr_4907 at 5820.625 kb on - strand, within Psyr_4907 at 5820.917 kb on + strand at 5820.932 kb on - strand at 5821.166 kb on + strand, within Psyr_4908 at 5821.167 kb on - strand, within Psyr_4908 at 5821.167 kb on - strand, within Psyr_4908 at 5821.216 kb on - strand, within Psyr_4908 at 5821.380 kb on + strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.443 kb on + strand, within Psyr_4908 at 5821.444 kb on - strand, within Psyr_4908 at 5821.444 kb on - strand, within Psyr_4908 at 5821.822 kb on + strand, within Psyr_4909 at 5821.822 kb on + strand, within Psyr_4909 at 5821.823 kb on - strand, within Psyr_4909 at 5821.823 kb on - strand, within Psyr_4909 at 5821.888 kb on + strand, within Psyr_4909 at 5821.888 kb on + strand, within Psyr_4909 at 5821.888 kb on + strand, within Psyr_4909 at 5821.888 kb on + strand, within Psyr_4909 at 5821.888 kb on + strand, within Psyr_4909 at 5821.888 kb on + strand, within Psyr_4909 at 5821.889 kb on - strand, within Psyr_4909 at 5821.889 kb on - strand, within Psyr_4909 at 5821.889 kb on - strand, within Psyr_4909 at 5821.889 kb on - strand, within Psyr_4909 at 5821.889 kb on - strand, within Psyr_4909 at 5821.889 kb on - strand, within Psyr_4909 at 5821.889 kb on - strand, within Psyr_4909 at 5821.889 kb on - strand, within Psyr_4909 at 5822.200 kb on + strand, within Psyr_4909 at 5822.200 kb on + strand, within Psyr_4909 at 5822.200 kb on + strand, within Psyr_4909 at 5822.200 kb on + strand, within Psyr_4909 at 5822.200 kb on + strand, within Psyr_4909 at 5822.200 kb on + strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.503 kb on + strand, within Psyr_4909 at 5822.503 kb on + strand, within Psyr_4909 at 5822.503 kb on + strand, within Psyr_4909 at 5822.504 kb on - strand, within Psyr_4909 at 5822.504 kb on - strand, within Psyr_4909 at 5822.654 kb on - strand, within Psyr_4909 at 5822.654 kb on - strand, within Psyr_4909 at 5822.704 kb on + strand, within Psyr_4909 at 5822.704 kb on + strand, within Psyr_4909 at 5822.704 kb on + strand, within Psyr_4909 at 5822.704 kb on + strand, within Psyr_4909 at 5822.704 kb on + strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.770 kb on - strand, within Psyr_4909 at 5822.795 kb on - strand, within Psyr_4909 at 5822.888 kb on + strand at 5822.888 kb on + strand at 5822.889 kb on - strand at 5822.889 kb on - strand at 5822.930 kb on + strand at 5822.945 kb on + strand at 5822.945 kb on + strand at 5822.945 kb on + strand at 5822.946 kb on - strand at 5822.946 kb on - strand at 5823.003 kb on - strand at 5823.018 kb on - strand, within Psyr_4910 at 5823.066 kb on + strand, within Psyr_4910 at 5823.067 kb on - strand, within Psyr_4910 at 5823.073 kb on + strand, within Psyr_4910 at 5823.074 kb on - strand, within Psyr_4910 at 5823.074 kb on - strand, within Psyr_4910 at 5823.074 kb on - strand, within Psyr_4910 at 5823.133 kb on + strand, within Psyr_4910 at 5823.165 kb on + strand, within Psyr_4910 at 5823.165 kb on + strand, within Psyr_4910 at 5823.165 kb on + strand, within Psyr_4910 at 5823.307 kb on + strand at 5823.348 kb on - strand at 5823.348 kb on - strand at 5823.412 kb on + strand at 5823.412 kb on + strand at 5823.460 kb on + strand at 5823.467 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.564 kb on + strand at 5823.565 kb on - strand at 5823.565 kb on - strand at 5823.565 kb on - strand at 5823.663 kb on + strand at 5823.689 kb on + strand at 5823.690 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 5,820,624 + Psyr_4907 0.82 -0.6 5,820,624 + Psyr_4907 0.82 -0.6 5,820,624 + Psyr_4907 0.82 +0.5 5,820,625 - Psyr_4907 0.82 -1.2 5,820,625 - Psyr_4907 0.82 -0.1 5,820,625 - Psyr_4907 0.82 -0.1 5,820,625 - Psyr_4907 0.82 -2.6 5,820,917 + +0.1 5,820,932 - -0.1 5,821,166 + Psyr_4908 0.32 -0.7 5,821,167 - Psyr_4908 0.32 -0.7 5,821,167 - Psyr_4908 0.32 +0.5 5,821,216 - Psyr_4908 0.42 +2.0 5,821,380 + Psyr_4908 0.76 +0.2 5,821,381 - Psyr_4908 0.76 +0.4 5,821,381 - Psyr_4908 0.76 +1.1 5,821,381 - Psyr_4908 0.76 +0.7 5,821,381 - Psyr_4908 0.76 +0.6 5,821,381 - Psyr_4908 0.76 +0.7 5,821,381 - Psyr_4908 0.76 -0.1 5,821,381 - Psyr_4908 0.76 +1.6 5,821,443 + Psyr_4908 0.89 -3.0 5,821,444 - Psyr_4908 0.89 -1.8 5,821,444 - Psyr_4908 0.89 +0.9 5,821,822 + Psyr_4909 0.19 +0.7 5,821,822 + Psyr_4909 0.19 +1.1 5,821,823 - Psyr_4909 0.19 -0.1 5,821,823 - Psyr_4909 0.19 +0.9 5,821,888 + Psyr_4909 0.24 -0.9 5,821,888 + Psyr_4909 0.24 +0.9 5,821,888 + Psyr_4909 0.24 -1.3 5,821,888 + Psyr_4909 0.24 +1.0 5,821,888 + Psyr_4909 0.24 +0.2 5,821,888 + Psyr_4909 0.24 -1.4 5,821,889 - Psyr_4909 0.24 +0.3 5,821,889 - Psyr_4909 0.24 +0.7 5,821,889 - Psyr_4909 0.24 +0.9 5,821,889 - Psyr_4909 0.24 -0.6 5,821,889 - Psyr_4909 0.24 +0.6 5,821,889 - Psyr_4909 0.24 +1.1 5,821,889 - Psyr_4909 0.24 -1.1 5,821,889 - Psyr_4909 0.24 +0.9 5,822,200 + Psyr_4909 0.46 +0.3 5,822,200 + Psyr_4909 0.46 -0.5 5,822,200 + Psyr_4909 0.46 -0.8 5,822,200 + Psyr_4909 0.46 -0.3 5,822,200 + Psyr_4909 0.46 +0.6 5,822,200 + Psyr_4909 0.46 +0.6 5,822,201 - Psyr_4909 0.46 +0.1 5,822,201 - Psyr_4909 0.46 -0.1 5,822,201 - Psyr_4909 0.46 +1.2 5,822,201 - Psyr_4909 0.46 -0.2 5,822,201 - Psyr_4909 0.46 +1.7 5,822,201 - Psyr_4909 0.46 -1.6 5,822,201 - Psyr_4909 0.46 -1.0 5,822,201 - Psyr_4909 0.46 +0.5 5,822,201 - Psyr_4909 0.46 +2.3 5,822,201 - Psyr_4909 0.46 -3.0 5,822,503 + Psyr_4909 0.68 +1.0 5,822,503 + Psyr_4909 0.68 -2.7 5,822,503 + Psyr_4909 0.68 -1.5 5,822,504 - Psyr_4909 0.68 -0.2 5,822,504 - Psyr_4909 0.68 +1.4 5,822,654 - Psyr_4909 0.79 +0.3 5,822,654 - Psyr_4909 0.79 -2.0 5,822,704 + Psyr_4909 0.83 -0.2 5,822,704 + Psyr_4909 0.83 -0.2 5,822,704 + Psyr_4909 0.83 -1.1 5,822,704 + Psyr_4909 0.83 +1.0 5,822,704 + Psyr_4909 0.83 -1.2 5,822,705 - Psyr_4909 0.83 -0.4 5,822,705 - Psyr_4909 0.83 +0.3 5,822,770 - Psyr_4909 0.87 -1.4 5,822,795 - Psyr_4909 0.89 -0.8 5,822,888 + -0.4 5,822,888 + -2.7 5,822,889 - +0.8 5,822,889 - -0.4 5,822,930 + -2.0 5,822,945 + -0.2 5,822,945 + -1.5 5,822,945 + -1.2 5,822,946 - +0.7 5,822,946 - -1.7 5,823,003 - +0.2 5,823,018 - Psyr_4910 0.13 -0.2 5,823,066 + Psyr_4910 0.31 +0.3 5,823,067 - Psyr_4910 0.32 +1.3 5,823,073 + Psyr_4910 0.34 -0.2 5,823,074 - Psyr_4910 0.34 -1.5 5,823,074 - Psyr_4910 0.34 +0.0 5,823,074 - Psyr_4910 0.34 +0.9 5,823,133 + Psyr_4910 0.57 +0.8 5,823,165 + Psyr_4910 0.70 +0.6 5,823,165 + Psyr_4910 0.70 +1.0 5,823,165 + Psyr_4910 0.70 +1.3 5,823,307 + -2.5 5,823,348 - -1.0 5,823,348 - -1.7 5,823,412 + -1.2 5,823,412 + -2.0 5,823,460 + -1.5 5,823,467 + -0.4 5,823,533 + -0.5 5,823,533 + +0.1 5,823,533 + -2.0 5,823,533 + -1.0 5,823,533 + -0.2 5,823,533 + +0.0 5,823,533 + -0.8 5,823,533 + -0.8 5,823,533 + +1.0 5,823,533 + +0.3 5,823,533 + -0.4 5,823,534 - +1.2 5,823,534 - -1.0 5,823,534 - +0.6 5,823,534 - -1.2 5,823,534 - +1.9 5,823,564 + -0.8 5,823,565 - -1.0 5,823,565 - +0.8 5,823,565 - +0.1 5,823,663 + +0.3 5,823,689 + +1.7 5,823,690 - +2.2
Or see this region's nucleotide sequence