Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4849 and Psyr_4850 are separated by 182 nucleotides Psyr_4850 and Psyr_4851 are separated by 80 nucleotides
Psyr_4849: Psyr_4849 - SdiA-regulated, at 5,755,699 to 5,756,643
_4849
Psyr_4850: Psyr_4850 - Fumarylacetoacetate (FAA) hydrolase, at 5,756,826 to 5,757,491
_4850
Psyr_4851: Psyr_4851 - FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal, at 5,757,572 to 5,758,990
_4851
Position (kb) 5756
5757
5758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5756.013 kb on + strand, within Psyr_4849 at 5756.013 kb on + strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.057 kb on - strand, within Psyr_4849 at 5756.133 kb on - strand, within Psyr_4849 at 5756.133 kb on - strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.367 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.435 kb on + strand, within Psyr_4849 at 5756.436 kb on - strand, within Psyr_4849 at 5756.574 kb on - strand at 5756.574 kb on - strand at 5756.594 kb on + strand at 5756.594 kb on + strand at 5756.594 kb on + strand at 5756.595 kb on - strand at 5756.595 kb on - strand at 5756.614 kb on - strand at 5756.635 kb on - strand at 5756.748 kb on + strand at 5756.748 kb on + strand at 5756.748 kb on + strand at 5756.827 kb on + strand at 5756.827 kb on + strand at 5757.219 kb on + strand, within Psyr_4850 at 5757.219 kb on + strand, within Psyr_4850 at 5757.220 kb on - strand, within Psyr_4850 at 5757.284 kb on - strand, within Psyr_4850 at 5757.412 kb on + strand, within Psyr_4850 at 5757.416 kb on + strand, within Psyr_4850 at 5757.417 kb on - strand, within Psyr_4850 at 5757.437 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.485 kb on - strand at 5757.509 kb on + strand at 5757.509 kb on + strand at 5757.509 kb on + strand at 5757.510 kb on - strand at 5757.510 kb on - strand at 5757.510 kb on - strand at 5757.516 kb on + strand at 5757.525 kb on + strand at 5757.525 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.643 kb on - strand at 5757.669 kb on + strand at 5757.669 kb on + strand at 5757.669 kb on + strand at 5757.678 kb on + strand at 5757.678 kb on + strand at 5757.679 kb on - strand at 5757.679 kb on - strand at 5757.679 kb on - strand at 5757.729 kb on + strand, within Psyr_4851 at 5757.943 kb on + strand, within Psyr_4851 at 5757.944 kb on - strand, within Psyr_4851 at 5757.944 kb on - strand, within Psyr_4851 at 5757.954 kb on + strand, within Psyr_4851 at 5757.987 kb on + strand, within Psyr_4851 at 5757.987 kb on + strand, within Psyr_4851 at 5757.987 kb on + strand, within Psyr_4851 at 5757.987 kb on + strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5758.013 kb on + strand, within Psyr_4851 at 5758.013 kb on + strand, within Psyr_4851 at 5758.014 kb on - strand, within Psyr_4851 at 5758.014 kb on - strand, within Psyr_4851 at 5758.014 kb on - strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.363 kb on + strand, within Psyr_4851
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 5,756,013 + Psyr_4849 0.33 -0.3 5,756,013 + Psyr_4849 0.33 +0.2 5,756,027 + Psyr_4849 0.35 +1.3 5,756,027 + Psyr_4849 0.35 +0.4 5,756,027 + Psyr_4849 0.35 -0.4 5,756,028 - Psyr_4849 0.35 -0.4 5,756,028 - Psyr_4849 0.35 +2.9 5,756,057 - Psyr_4849 0.38 +0.5 5,756,133 - Psyr_4849 0.46 -2.7 5,756,133 - Psyr_4849 0.46 -3.4 5,756,290 + Psyr_4849 0.63 -2.8 5,756,290 + Psyr_4849 0.63 -1.0 5,756,290 + Psyr_4849 0.63 -0.4 5,756,290 + Psyr_4849 0.63 -1.3 5,756,290 + Psyr_4849 0.63 -1.4 5,756,291 - Psyr_4849 0.63 +1.7 5,756,291 - Psyr_4849 0.63 +1.5 5,756,291 - Psyr_4849 0.63 -1.0 5,756,291 - Psyr_4849 0.63 -1.5 5,756,291 - Psyr_4849 0.63 +0.3 5,756,367 + Psyr_4849 0.71 -1.0 5,756,369 + Psyr_4849 0.71 +0.6 5,756,369 + Psyr_4849 0.71 -0.1 5,756,369 + Psyr_4849 0.71 -0.2 5,756,369 + Psyr_4849 0.71 -1.0 5,756,369 + Psyr_4849 0.71 +0.6 5,756,369 + Psyr_4849 0.71 -0.2 5,756,370 - Psyr_4849 0.71 -1.1 5,756,370 - Psyr_4849 0.71 -2.5 5,756,370 - Psyr_4849 0.71 -0.5 5,756,370 - Psyr_4849 0.71 -1.4 5,756,370 - Psyr_4849 0.71 -1.8 5,756,370 - Psyr_4849 0.71 +0.3 5,756,370 - Psyr_4849 0.71 -0.5 5,756,435 + Psyr_4849 0.78 +1.7 5,756,436 - Psyr_4849 0.78 -0.2 5,756,574 - +0.6 5,756,574 - +0.0 5,756,594 + -1.5 5,756,594 + +0.6 5,756,594 + +0.8 5,756,595 - +0.1 5,756,595 - +1.5 5,756,614 - -1.5 5,756,635 - -0.9 5,756,748 + +1.9 5,756,748 + +1.6 5,756,748 + +1.3 5,756,827 + +0.0 5,756,827 + -2.1 5,757,219 + Psyr_4850 0.59 -1.2 5,757,219 + Psyr_4850 0.59 -1.4 5,757,220 - Psyr_4850 0.59 +1.0 5,757,284 - Psyr_4850 0.69 -0.3 5,757,412 + Psyr_4850 0.88 -0.7 5,757,416 + Psyr_4850 0.89 +0.5 5,757,417 - Psyr_4850 0.89 +0.9 5,757,437 + -0.9 5,757,472 + -0.2 5,757,472 + -3.2 5,757,472 + +0.6 5,757,472 + -1.2 5,757,472 + -1.3 5,757,472 + +0.4 5,757,472 + -0.1 5,757,472 + -3.0 5,757,472 + -1.5 5,757,472 + -0.5 5,757,473 - -0.1 5,757,473 - -0.7 5,757,473 - +1.1 5,757,473 - +0.7 5,757,473 - +0.3 5,757,485 - -1.5 5,757,509 + -1.2 5,757,509 + -2.0 5,757,509 + +3.3 5,757,510 - +0.6 5,757,510 - +0.3 5,757,510 - +0.8 5,757,516 + -1.8 5,757,525 + -1.0 5,757,525 + -0.7 5,757,642 + +0.1 5,757,642 + -0.4 5,757,642 + -0.3 5,757,643 - +1.3 5,757,669 + -2.0 5,757,669 + +0.2 5,757,669 + -1.2 5,757,678 + -2.8 5,757,678 + -0.2 5,757,679 - +2.0 5,757,679 - -1.0 5,757,679 - -0.2 5,757,729 + Psyr_4851 0.11 +0.8 5,757,943 + Psyr_4851 0.26 +0.3 5,757,944 - Psyr_4851 0.26 -0.6 5,757,944 - Psyr_4851 0.26 +0.2 5,757,954 + Psyr_4851 0.27 -1.4 5,757,987 + Psyr_4851 0.29 +0.5 5,757,987 + Psyr_4851 0.29 -1.0 5,757,987 + Psyr_4851 0.29 -2.0 5,757,987 + Psyr_4851 0.29 -1.4 5,757,988 - Psyr_4851 0.29 -1.6 5,757,988 - Psyr_4851 0.29 +0.2 5,757,988 - Psyr_4851 0.29 -1.5 5,757,988 - Psyr_4851 0.29 +1.2 5,757,988 - Psyr_4851 0.29 -1.0 5,757,988 - Psyr_4851 0.29 +0.8 5,757,988 - Psyr_4851 0.29 -1.2 5,758,013 + Psyr_4851 0.31 -2.1 5,758,013 + Psyr_4851 0.31 +1.3 5,758,014 - Psyr_4851 0.31 -0.0 5,758,014 - Psyr_4851 0.31 +1.3 5,758,014 - Psyr_4851 0.31 -0.4 5,758,133 + Psyr_4851 0.40 -1.5 5,758,133 + Psyr_4851 0.40 -1.9 5,758,133 + Psyr_4851 0.40 -1.8 5,758,133 + Psyr_4851 0.40 -1.1 5,758,133 + Psyr_4851 0.40 -0.2 5,758,133 + Psyr_4851 0.40 -1.7 5,758,134 - Psyr_4851 0.40 -1.8 5,758,134 - Psyr_4851 0.40 -2.8 5,758,134 - Psyr_4851 0.40 -0.2 5,758,137 + Psyr_4851 0.40 +0.2 5,758,137 + Psyr_4851 0.40 -0.8 5,758,137 + Psyr_4851 0.40 +1.3 5,758,137 + Psyr_4851 0.40 -2.0 5,758,137 + Psyr_4851 0.40 -1.6 5,758,137 + Psyr_4851 0.40 -0.2 5,758,137 + Psyr_4851 0.40 +0.4 5,758,137 + Psyr_4851 0.40 +0.3 5,758,137 + Psyr_4851 0.40 -0.2 5,758,137 + Psyr_4851 0.40 -0.2 5,758,137 + Psyr_4851 0.40 +0.5 5,758,138 - Psyr_4851 0.40 +1.2 5,758,138 - Psyr_4851 0.40 -0.4 5,758,363 + Psyr_4851 0.56 +0.1
Or see this region's nucleotide sequence