Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4275 and Psyr_4276 are separated by 196 nucleotides Psyr_4276 and Psyr_4277 are separated by 190 nucleotides Psyr_4277 and Psyr_4278 are separated by 336 nucleotides Psyr_4278 and Psyr_4279 are separated by 129 nucleotides
Psyr_4275: Psyr_4275 - DNA replication and repair protein RadA, at 5,099,513 to 5,100,880
_4275
Psyr_4276: Psyr_4276 - Large-conductance mechanosensitive channel, at 5,101,077 to 5,101,523
_4276
Psyr_4277: Psyr_4277 - Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region, at 5,101,714 to 5,102,490
_4277
Psyr_4278: Psyr_4278 - regulatory protein, LuxR, at 5,102,827 to 5,103,060
_4278
Psyr_4279: Psyr_4279 - 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase, at 5,103,190 to 5,104,314
_4279
Position (kb) 5101
5102
5103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5100.858 kb on + strand at 5100.858 kb on + strand at 5100.859 kb on - strand at 5100.859 kb on - strand at 5100.859 kb on - strand at 5100.859 kb on - strand at 5101.022 kb on + strand at 5101.022 kb on + strand at 5101.022 kb on + strand at 5101.022 kb on + strand at 5101.023 kb on - strand at 5101.023 kb on - strand at 5101.023 kb on - strand at 5101.023 kb on - strand at 5101.023 kb on - strand at 5101.033 kb on + strand at 5101.034 kb on - strand at 5101.054 kb on + strand at 5101.055 kb on - strand at 5101.061 kb on + strand at 5101.061 kb on + strand at 5101.061 kb on + strand at 5101.061 kb on + strand at 5101.062 kb on - strand at 5101.062 kb on - strand at 5101.072 kb on - strand at 5101.089 kb on - strand at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.130 kb on + strand, within Psyr_4276 at 5101.131 kb on - strand, within Psyr_4276 at 5101.145 kb on + strand, within Psyr_4276 at 5101.146 kb on - strand, within Psyr_4276 at 5101.352 kb on - strand, within Psyr_4276 at 5101.514 kb on + strand at 5101.515 kb on - strand at 5101.660 kb on + strand at 5101.660 kb on + strand at 5101.661 kb on - strand at 5101.668 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.722 kb on - strand at 5101.722 kb on - strand at 5101.722 kb on - strand at 5101.722 kb on - strand at 5101.722 kb on - strand at 5101.722 kb on - strand at 5101.722 kb on - strand at 5101.722 kb on - strand at 5101.906 kb on - strand, within Psyr_4277 at 5101.986 kb on - strand, within Psyr_4277 at 5101.986 kb on - strand, within Psyr_4277 at 5102.022 kb on - strand, within Psyr_4277 at 5102.051 kb on + strand, within Psyr_4277 at 5102.052 kb on - strand, within Psyr_4277 at 5102.052 kb on - strand, within Psyr_4277 at 5102.052 kb on - strand, within Psyr_4277 at 5102.318 kb on + strand, within Psyr_4277 at 5102.329 kb on + strand, within Psyr_4277 at 5102.330 kb on - strand, within Psyr_4277 at 5102.601 kb on + strand at 5102.606 kb on + strand at 5102.606 kb on + strand at 5102.607 kb on - strand at 5102.765 kb on + strand at 5102.766 kb on - strand at 5102.766 kb on - strand at 5102.775 kb on + strand at 5102.804 kb on + strand at 5102.804 kb on + strand at 5102.805 kb on - strand at 5102.810 kb on + strand at 5102.810 kb on + strand at 5102.810 kb on + strand at 5102.811 kb on - strand at 5102.811 kb on - strand at 5102.811 kb on - strand at 5102.824 kb on + strand at 5102.824 kb on + strand at 5102.825 kb on - strand at 5102.825 kb on - strand at 5102.825 kb on - strand at 5102.843 kb on + strand at 5102.843 kb on + strand at 5102.843 kb on + strand at 5102.844 kb on - strand at 5103.113 kb on - strand at 5103.113 kb on - strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.287 kb on - strand at 5103.466 kb on + strand, within Psyr_4279 at 5103.466 kb on + strand, within Psyr_4279 at 5103.467 kb on - strand, within Psyr_4279 at 5103.467 kb on - strand, within Psyr_4279
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 5,100,858 + +0.6 5,100,858 + +0.3 5,100,859 - -1.0 5,100,859 - -0.2 5,100,859 - +0.3 5,100,859 - +0.3 5,101,022 + -0.9 5,101,022 + -0.7 5,101,022 + +1.3 5,101,022 + +0.8 5,101,023 - +1.5 5,101,023 - -0.9 5,101,023 - -0.9 5,101,023 - -1.5 5,101,023 - +0.4 5,101,033 + +0.7 5,101,034 - +0.0 5,101,054 + +0.2 5,101,055 - +1.1 5,101,061 + +0.4 5,101,061 + +0.6 5,101,061 + +1.6 5,101,061 + -0.1 5,101,062 - +1.3 5,101,062 - -0.7 5,101,072 - -0.6 5,101,089 - -1.8 5,101,123 + Psyr_4276 0.10 +0.1 5,101,123 + Psyr_4276 0.10 +0.5 5,101,123 + Psyr_4276 0.10 -1.2 5,101,123 + Psyr_4276 0.10 +1.3 5,101,123 + Psyr_4276 0.10 +1.4 5,101,123 + Psyr_4276 0.10 -0.7 5,101,123 + Psyr_4276 0.10 -2.7 5,101,123 + Psyr_4276 0.10 -1.6 5,101,123 + Psyr_4276 0.10 +0.2 5,101,123 + Psyr_4276 0.10 +1.0 5,101,123 + Psyr_4276 0.10 -1.5 5,101,123 + Psyr_4276 0.10 -0.7 5,101,123 + Psyr_4276 0.10 +1.6 5,101,124 - Psyr_4276 0.11 +0.8 5,101,124 - Psyr_4276 0.11 -0.6 5,101,124 - Psyr_4276 0.11 +1.3 5,101,124 - Psyr_4276 0.11 -1.8 5,101,124 - Psyr_4276 0.11 +0.2 5,101,124 - Psyr_4276 0.11 -0.3 5,101,124 - Psyr_4276 0.11 +0.7 5,101,124 - Psyr_4276 0.11 -0.3 5,101,124 - Psyr_4276 0.11 -1.0 5,101,124 - Psyr_4276 0.11 -0.7 5,101,130 + Psyr_4276 0.12 -0.2 5,101,131 - Psyr_4276 0.12 +0.2 5,101,145 + Psyr_4276 0.15 -0.6 5,101,146 - Psyr_4276 0.15 -0.8 5,101,352 - Psyr_4276 0.62 +0.7 5,101,514 + +0.5 5,101,515 - +0.0 5,101,660 + +0.2 5,101,660 + +0.7 5,101,661 - -0.4 5,101,668 + -2.6 5,101,721 + -0.8 5,101,721 + -1.0 5,101,721 + -1.8 5,101,721 + -1.7 5,101,722 - -1.6 5,101,722 - -1.3 5,101,722 - +1.8 5,101,722 - +0.8 5,101,722 - +1.4 5,101,722 - +1.9 5,101,722 - +2.9 5,101,722 - -1.7 5,101,906 - Psyr_4277 0.25 +0.8 5,101,986 - Psyr_4277 0.35 +0.1 5,101,986 - Psyr_4277 0.35 +0.6 5,102,022 - Psyr_4277 0.40 +0.1 5,102,051 + Psyr_4277 0.43 -2.0 5,102,052 - Psyr_4277 0.44 -0.3 5,102,052 - Psyr_4277 0.44 -2.6 5,102,052 - Psyr_4277 0.44 +0.8 5,102,318 + Psyr_4277 0.78 +1.3 5,102,329 + Psyr_4277 0.79 +0.0 5,102,330 - Psyr_4277 0.79 +0.3 5,102,601 + -0.5 5,102,606 + -1.0 5,102,606 + +0.7 5,102,607 - -0.6 5,102,765 + +1.2 5,102,766 - +2.1 5,102,766 - -0.8 5,102,775 + -0.1 5,102,804 + -0.4 5,102,804 + -0.3 5,102,805 - -0.8 5,102,810 + +0.2 5,102,810 + -1.3 5,102,810 + -1.3 5,102,811 - -1.7 5,102,811 - +0.4 5,102,811 - -0.5 5,102,824 + -1.2 5,102,824 + -0.7 5,102,825 - +0.9 5,102,825 - +0.7 5,102,825 - -0.3 5,102,843 + -1.7 5,102,843 + -0.4 5,102,843 + -0.5 5,102,844 - +0.2 5,103,113 - -0.8 5,103,113 - -2.8 5,103,160 + -0.7 5,103,160 + -1.1 5,103,160 + -2.4 5,103,160 + +0.0 5,103,160 + -0.3 5,103,160 + +0.2 5,103,160 + +0.1 5,103,160 + -0.8 5,103,160 + -1.4 5,103,160 + -3.5 5,103,161 - -0.8 5,103,161 - -2.6 5,103,161 - -1.1 5,103,161 - +1.1 5,103,161 - +0.0 5,103,161 - +0.5 5,103,161 - +0.7 5,103,161 - -0.5 5,103,161 - +0.6 5,103,161 - +0.2 5,103,161 - -0.7 5,103,161 - -2.5 5,103,287 - +1.0 5,103,466 + Psyr_4279 0.25 -1.3 5,103,466 + Psyr_4279 0.25 -0.3 5,103,467 - Psyr_4279 0.25 +0.0 5,103,467 - Psyr_4279 0.25 +0.5
Or see this region's nucleotide sequence