Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3875

Experiment: KB with Carbenicillin 3.1 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3874 and Psyr_3875 are separated by 77 nucleotidesPsyr_3875 and Psyr_3876 overlap by 4 nucleotidesPsyr_3876 and Psyr_3877 are separated by 12 nucleotides Psyr_3874: Psyr_3874 - amino acid ABC transporter substrate-binding protein, PAAT family, at 4,615,411 to 4,616,193 _3874 Psyr_3875: Psyr_3875 - amino acid ABC transporter membrane protein 1, PAAT family, at 4,616,271 to 4,616,999 _3875 Psyr_3876: Psyr_3876 - amino acid ABC transporter membrane protein 2, PAAT family, at 4,616,996 to 4,617,706 _3876 Psyr_3877: Psyr_3877 - Succinylglutamate desuccinylase/aspartoacylase, at 4,617,719 to 4,618,837 _3877 Position (kb) 4616 4617Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4615.274 kb on + strandat 4615.274 kb on + strandat 4615.274 kb on + strandat 4615.288 kb on + strandat 4615.342 kb on - strandat 4615.342 kb on - strandat 4615.342 kb on - strandat 4615.391 kb on - strandat 4615.391 kb on - strandat 4615.398 kb on + strandat 4615.399 kb on - strandat 4615.483 kb on + strandat 4615.483 kb on + strandat 4615.483 kb on + strandat 4615.483 kb on + strandat 4615.484 kb on - strandat 4615.484 kb on - strandat 4615.484 kb on - strandat 4615.484 kb on - strandat 4615.516 kb on + strand, within Psyr_3874at 4615.516 kb on + strand, within Psyr_3874at 4615.516 kb on + strand, within Psyr_3874at 4615.516 kb on + strand, within Psyr_3874at 4615.516 kb on + strand, within Psyr_3874at 4615.517 kb on - strand, within Psyr_3874at 4615.517 kb on - strand, within Psyr_3874at 4615.517 kb on - strand, within Psyr_3874at 4615.677 kb on + strand, within Psyr_3874at 4615.720 kb on + strand, within Psyr_3874at 4615.720 kb on + strand, within Psyr_3874at 4615.720 kb on + strand, within Psyr_3874at 4615.720 kb on + strand, within Psyr_3874at 4615.720 kb on + strand, within Psyr_3874at 4615.720 kb on + strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.721 kb on - strand, within Psyr_3874at 4615.822 kb on + strand, within Psyr_3874at 4615.850 kb on - strand, within Psyr_3874at 4615.850 kb on - strand, within Psyr_3874at 4616.009 kb on - strand, within Psyr_3874at 4616.137 kb on + strandat 4616.137 kb on + strandat 4616.137 kb on + strandat 4616.138 kb on - strandat 4616.138 kb on - strandat 4616.138 kb on - strandat 4616.138 kb on - strandat 4616.138 kb on - strandat 4616.191 kb on + strandat 4616.191 kb on + strandat 4616.191 kb on + strandat 4616.191 kb on + strandat 4616.192 kb on - strandat 4616.192 kb on - strandat 4616.267 kb on - strandat 4616.466 kb on + strand, within Psyr_3875at 4616.466 kb on + strand, within Psyr_3875at 4616.467 kb on - strand, within Psyr_3875at 4616.467 kb on - strand, within Psyr_3875at 4616.571 kb on + strand, within Psyr_3875at 4616.571 kb on + strand, within Psyr_3875at 4616.571 kb on + strand, within Psyr_3875at 4616.571 kb on + strand, within Psyr_3875at 4616.572 kb on - strand, within Psyr_3875at 4616.572 kb on - strand, within Psyr_3875at 4616.572 kb on - strand, within Psyr_3875at 4616.572 kb on - strand, within Psyr_3875at 4616.622 kb on + strand, within Psyr_3875at 4616.622 kb on + strand, within Psyr_3875at 4616.622 kb on + strand, within Psyr_3875at 4616.622 kb on + strand, within Psyr_3875at 4616.623 kb on - strand, within Psyr_3875at 4616.623 kb on - strand, within Psyr_3875at 4616.631 kb on + strand, within Psyr_3875at 4616.631 kb on + strand, within Psyr_3875at 4616.632 kb on - strand, within Psyr_3875at 4616.874 kb on + strand, within Psyr_3875at 4616.875 kb on - strand, within Psyr_3875at 4616.875 kb on - strand, within Psyr_3875at 4616.886 kb on + strand, within Psyr_3875at 4616.887 kb on - strand, within Psyr_3875at 4616.913 kb on + strand, within Psyr_3875at 4616.913 kb on + strand, within Psyr_3875at 4616.914 kb on - strand, within Psyr_3875at 4616.967 kb on + strandat 4616.967 kb on + strandat 4616.968 kb on - strandat 4616.968 kb on - strandat 4617.036 kb on - strandat 4617.036 kb on - strandat 4617.037 kb on + strandat 4617.037 kb on + strandat 4617.037 kb on + strandat 4617.037 kb on + strandat 4617.037 kb on + strandat 4617.037 kb on + strandat 4617.037 kb on + strandat 4617.037 kb on + strandat 4617.038 kb on - strandat 4617.038 kb on - strandat 4617.038 kb on - strandat 4617.179 kb on + strand, within Psyr_3876at 4617.179 kb on + strand, within Psyr_3876at 4617.179 kb on + strand, within Psyr_3876at 4617.179 kb on + strand, within Psyr_3876at 4617.180 kb on - strand, within Psyr_3876at 4617.180 kb on - strand, within Psyr_3876at 4617.180 kb on - strand, within Psyr_3876at 4617.180 kb on - strand, within Psyr_3876at 4617.180 kb on - strand, within Psyr_3876at 4617.180 kb on - strand, within Psyr_3876at 4617.185 kb on + strand, within Psyr_3876at 4617.185 kb on + strand, within Psyr_3876at 4617.185 kb on + strand, within Psyr_3876at 4617.185 kb on + strand, within Psyr_3876at 4617.185 kb on + strand, within Psyr_3876at 4617.186 kb on - strand, within Psyr_3876at 4617.209 kb on + strand, within Psyr_3876at 4617.209 kb on + strand, within Psyr_3876at 4617.209 kb on + strand, within Psyr_3876at 4617.209 kb on + strand, within Psyr_3876at 4617.209 kb on + strand, within Psyr_3876at 4617.209 kb on + strand, within Psyr_3876at 4617.209 kb on + strand, within Psyr_3876at 4617.210 kb on - strand, within Psyr_3876at 4617.210 kb on - strand, within Psyr_3876at 4617.210 kb on - strand, within Psyr_3876at 4617.210 kb on - strand, within Psyr_3876at 4617.210 kb on - strand, within Psyr_3876at 4617.210 kb on - strand, within Psyr_3876at 4617.210 kb on - strand, within Psyr_3876at 4617.211 kb on + strand, within Psyr_3876at 4617.211 kb on + strand, within Psyr_3876at 4617.211 kb on + strand, within Psyr_3876at 4617.211 kb on + strand, within Psyr_3876at 4617.211 kb on + strand, within Psyr_3876at 4617.212 kb on - strand, within Psyr_3876at 4617.212 kb on - strand, within Psyr_3876at 4617.212 kb on - strand, within Psyr_3876at 4617.213 kb on + strand, within Psyr_3876at 4617.213 kb on + strand, within Psyr_3876at 4617.213 kb on + strand, within Psyr_3876at 4617.213 kb on + strand, within Psyr_3876at 4617.213 kb on + strand, within Psyr_3876at 4617.213 kb on + strand, within Psyr_3876at 4617.213 kb on + strand, within Psyr_3876at 4617.213 kb on + strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.214 kb on - strand, within Psyr_3876at 4617.231 kb on - strand, within Psyr_3876at 4617.242 kb on + strand, within Psyr_3876at 4617.242 kb on + strand, within Psyr_3876at 4617.243 kb on - strand, within Psyr_3876at 4617.243 kb on - strand, within Psyr_3876at 4617.243 kb on - strand, within Psyr_3876at 4617.243 kb on - strand, within Psyr_3876at 4617.243 kb on - strand, within Psyr_3876at 4617.243 kb on - strand, within Psyr_3876at 4617.341 kb on + strand, within Psyr_3876at 4617.342 kb on - strand, within Psyr_3876at 4617.440 kb on + strand, within Psyr_3876at 4617.441 kb on - strand, within Psyr_3876at 4617.441 kb on - strand, within Psyr_3876at 4617.495 kb on + strand, within Psyr_3876at 4617.495 kb on + strand, within Psyr_3876at 4617.495 kb on + strand, within Psyr_3876at 4617.495 kb on + strand, within Psyr_3876at 4617.495 kb on + strand, within Psyr_3876at 4617.495 kb on + strand, within Psyr_3876at 4617.495 kb on + strand, within Psyr_3876at 4617.495 kb on + strand, within Psyr_3876at 4617.496 kb on - strand, within Psyr_3876at 4617.496 kb on - strand, within Psyr_3876at 4617.496 kb on - strand, within Psyr_3876at 4617.496 kb on - strand, within Psyr_3876at 4617.496 kb on - strand, within Psyr_3876at 4617.496 kb on - strand, within Psyr_3876at 4617.498 kb on + strand, within Psyr_3876at 4617.498 kb on + strand, within Psyr_3876at 4617.499 kb on - strand, within Psyr_3876at 4617.499 kb on - strand, within Psyr_3876at 4617.499 kb on - strand, within Psyr_3876at 4617.499 kb on - strand, within Psyr_3876at 4617.499 kb on - strand, within Psyr_3876at 4617.623 kb on + strand, within Psyr_3876at 4617.623 kb on + strand, within Psyr_3876at 4617.624 kb on - strand, within Psyr_3876at 4617.624 kb on - strand, within Psyr_3876at 4617.624 kb on - strand, within Psyr_3876at 4617.624 kb on - strand, within Psyr_3876at 4617.730 kb on + strandat 4617.731 kb on - strandat 4617.818 kb on + strandat 4617.818 kb on + strandat 4617.818 kb on + strandat 4617.818 kb on + strandat 4617.818 kb on + strandat 4617.819 kb on - strandat 4617.819 kb on - strandat 4617.819 kb on - strandat 4617.819 kb on - strandat 4617.819 kb on - strandat 4617.819 kb on - strandat 4617.819 kb on - strandat 4617.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml
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4,615,274 + +0.7
4,615,274 + +0.4
4,615,274 + -1.8
4,615,288 + -0.1
4,615,342 - +1.1
4,615,342 - +2.4
4,615,342 - -0.0
4,615,391 - +1.9
4,615,391 - +0.4
4,615,398 + +0.2
4,615,399 - +2.0
4,615,483 + -1.3
4,615,483 + -3.2
4,615,483 + -0.5
4,615,483 + -0.9
4,615,484 - -1.2
4,615,484 - +1.7
4,615,484 - -0.0
4,615,484 - +1.8
4,615,516 + Psyr_3874 0.13 -0.9
4,615,516 + Psyr_3874 0.13 +0.6
4,615,516 + Psyr_3874 0.13 -1.2
4,615,516 + Psyr_3874 0.13 -1.7
4,615,516 + Psyr_3874 0.13 +0.8
4,615,517 - Psyr_3874 0.14 -1.8
4,615,517 - Psyr_3874 0.14 +0.1
4,615,517 - Psyr_3874 0.14 +0.1
4,615,677 + Psyr_3874 0.34 -1.6
4,615,720 + Psyr_3874 0.39 -1.2
4,615,720 + Psyr_3874 0.39 +1.9
4,615,720 + Psyr_3874 0.39 -0.2
4,615,720 + Psyr_3874 0.39 +0.1
4,615,720 + Psyr_3874 0.39 +0.4
4,615,720 + Psyr_3874 0.39 +1.4
4,615,721 - Psyr_3874 0.40 +2.0
4,615,721 - Psyr_3874 0.40 -0.6
4,615,721 - Psyr_3874 0.40 -0.8
4,615,721 - Psyr_3874 0.40 -0.2
4,615,721 - Psyr_3874 0.40 -1.9
4,615,721 - Psyr_3874 0.40 -2.2
4,615,721 - Psyr_3874 0.40 -0.2
4,615,721 - Psyr_3874 0.40 -0.8
4,615,721 - Psyr_3874 0.40 -1.2
4,615,721 - Psyr_3874 0.40 +1.1
4,615,822 + Psyr_3874 0.52 +0.7
4,615,850 - Psyr_3874 0.56 -0.4
4,615,850 - Psyr_3874 0.56 +0.1
4,616,009 - Psyr_3874 0.76 +0.5
4,616,137 + -0.3
4,616,137 + -0.7
4,616,137 + +1.4
4,616,138 - +0.5
4,616,138 - +1.3
4,616,138 - +1.0
4,616,138 - +0.4
4,616,138 - -0.2
4,616,191 + -0.5
4,616,191 + +0.6
4,616,191 + +1.2
4,616,191 + +0.4
4,616,192 - -0.7
4,616,192 - -2.1
4,616,267 - -2.2
4,616,466 + Psyr_3875 0.27 -2.8
4,616,466 + Psyr_3875 0.27 -1.8
4,616,467 - Psyr_3875 0.27 +0.5
4,616,467 - Psyr_3875 0.27 -0.6
4,616,571 + Psyr_3875 0.41 -0.9
4,616,571 + Psyr_3875 0.41 -1.8
4,616,571 + Psyr_3875 0.41 -1.2
4,616,571 + Psyr_3875 0.41 +0.4
4,616,572 - Psyr_3875 0.41 +0.1
4,616,572 - Psyr_3875 0.41 -1.2
4,616,572 - Psyr_3875 0.41 -2.0
4,616,572 - Psyr_3875 0.41 -0.6
4,616,622 + Psyr_3875 0.48 +0.4
4,616,622 + Psyr_3875 0.48 +0.2
4,616,622 + Psyr_3875 0.48 -1.4
4,616,622 + Psyr_3875 0.48 -1.4
4,616,623 - Psyr_3875 0.48 -0.5
4,616,623 - Psyr_3875 0.48 -0.1
4,616,631 + Psyr_3875 0.49 +0.7
4,616,631 + Psyr_3875 0.49 -1.2
4,616,632 - Psyr_3875 0.50 -0.1
4,616,874 + Psyr_3875 0.83 -0.2
4,616,875 - Psyr_3875 0.83 -2.9
4,616,875 - Psyr_3875 0.83 -1.8
4,616,886 + Psyr_3875 0.84 -0.2
4,616,887 - Psyr_3875 0.84 -2.3
4,616,913 + Psyr_3875 0.88 +1.4
4,616,913 + Psyr_3875 0.88 -0.6
4,616,914 - Psyr_3875 0.88 -1.8
4,616,967 + -2.1
4,616,967 + +0.7
4,616,968 - -0.4
4,616,968 - +0.4
4,617,036 - -0.0
4,617,036 - -1.6
4,617,037 + +0.5
4,617,037 + -0.2
4,617,037 + +1.6
4,617,037 + +0.6
4,617,037 + +0.4
4,617,037 + +1.1
4,617,037 + +1.2
4,617,037 + +1.2
4,617,038 - +0.1
4,617,038 - -1.1
4,617,038 - +0.0
4,617,179 + Psyr_3876 0.26 -3.1
4,617,179 + Psyr_3876 0.26 +0.5
4,617,179 + Psyr_3876 0.26 +0.5
4,617,179 + Psyr_3876 0.26 -1.8
4,617,180 - Psyr_3876 0.26 +0.5
4,617,180 - Psyr_3876 0.26 +0.4
4,617,180 - Psyr_3876 0.26 +2.4
4,617,180 - Psyr_3876 0.26 +0.1
4,617,180 - Psyr_3876 0.26 -2.7
4,617,180 - Psyr_3876 0.26 -1.0
4,617,185 + Psyr_3876 0.27 -1.0
4,617,185 + Psyr_3876 0.27 -0.6
4,617,185 + Psyr_3876 0.27 +1.8
4,617,185 + Psyr_3876 0.27 +1.2
4,617,185 + Psyr_3876 0.27 -1.2
4,617,186 - Psyr_3876 0.27 +0.5
4,617,209 + Psyr_3876 0.30 +0.6
4,617,209 + Psyr_3876 0.30 +0.8
4,617,209 + Psyr_3876 0.30 -0.4
4,617,209 + Psyr_3876 0.30 -0.6
4,617,209 + Psyr_3876 0.30 +1.9
4,617,209 + Psyr_3876 0.30 +0.3
4,617,209 + Psyr_3876 0.30 -1.6
4,617,210 - Psyr_3876 0.30 -0.7
4,617,210 - Psyr_3876 0.30 +0.1
4,617,210 - Psyr_3876 0.30 -1.2
4,617,210 - Psyr_3876 0.30 -0.6
4,617,210 - Psyr_3876 0.30 -1.6
4,617,210 - Psyr_3876 0.30 +0.2
4,617,210 - Psyr_3876 0.30 +0.0
4,617,211 + Psyr_3876 0.30 -0.2
4,617,211 + Psyr_3876 0.30 +1.1
4,617,211 + Psyr_3876 0.30 -0.2
4,617,211 + Psyr_3876 0.30 -0.6
4,617,211 + Psyr_3876 0.30 -2.3
4,617,212 - Psyr_3876 0.30 +0.8
4,617,212 - Psyr_3876 0.30 -1.0
4,617,212 - Psyr_3876 0.30 +1.0
4,617,213 + Psyr_3876 0.31 +1.4
4,617,213 + Psyr_3876 0.31 +0.7
4,617,213 + Psyr_3876 0.31 -0.5
4,617,213 + Psyr_3876 0.31 -0.6
4,617,213 + Psyr_3876 0.31 -3.2
4,617,213 + Psyr_3876 0.31 +0.4
4,617,213 + Psyr_3876 0.31 -1.5
4,617,213 + Psyr_3876 0.31 +1.4
4,617,214 - Psyr_3876 0.31 +1.4
4,617,214 - Psyr_3876 0.31 +0.6
4,617,214 - Psyr_3876 0.31 +1.0
4,617,214 - Psyr_3876 0.31 -1.5
4,617,214 - Psyr_3876 0.31 -1.2
4,617,214 - Psyr_3876 0.31 +1.4
4,617,214 - Psyr_3876 0.31 -1.4
4,617,214 - Psyr_3876 0.31 +1.8
4,617,214 - Psyr_3876 0.31 -2.3
4,617,214 - Psyr_3876 0.31 +0.8
4,617,214 - Psyr_3876 0.31 -0.2
4,617,214 - Psyr_3876 0.31 +1.2
4,617,214 - Psyr_3876 0.31 +0.7
4,617,214 - Psyr_3876 0.31 -1.6
4,617,214 - Psyr_3876 0.31 -1.1
4,617,214 - Psyr_3876 0.31 -1.0
4,617,214 - Psyr_3876 0.31 +0.5
4,617,231 - Psyr_3876 0.33 -1.2
4,617,242 + Psyr_3876 0.35 +0.8
4,617,242 + Psyr_3876 0.35 -0.1
4,617,243 - Psyr_3876 0.35 -0.3
4,617,243 - Psyr_3876 0.35 +1.4
4,617,243 - Psyr_3876 0.35 -2.2
4,617,243 - Psyr_3876 0.35 -1.3
4,617,243 - Psyr_3876 0.35 -1.0
4,617,243 - Psyr_3876 0.35 +1.0
4,617,341 + Psyr_3876 0.49 +1.1
4,617,342 - Psyr_3876 0.49 -0.2
4,617,440 + Psyr_3876 0.62 +0.8
4,617,441 - Psyr_3876 0.63 -0.7
4,617,441 - Psyr_3876 0.63 -0.7
4,617,495 + Psyr_3876 0.70 +0.5
4,617,495 + Psyr_3876 0.70 +1.4
4,617,495 + Psyr_3876 0.70 +1.4
4,617,495 + Psyr_3876 0.70 +0.9
4,617,495 + Psyr_3876 0.70 +1.9
4,617,495 + Psyr_3876 0.70 +2.1
4,617,495 + Psyr_3876 0.70 +2.6
4,617,495 + Psyr_3876 0.70 +0.4
4,617,496 - Psyr_3876 0.70 +0.1
4,617,496 - Psyr_3876 0.70 -0.2
4,617,496 - Psyr_3876 0.70 -0.6
4,617,496 - Psyr_3876 0.70 -0.2
4,617,496 - Psyr_3876 0.70 +0.4
4,617,496 - Psyr_3876 0.70 -0.2
4,617,498 + Psyr_3876 0.71 -2.0
4,617,498 + Psyr_3876 0.71 -0.5
4,617,499 - Psyr_3876 0.71 +0.7
4,617,499 - Psyr_3876 0.71 +0.2
4,617,499 - Psyr_3876 0.71 +0.2
4,617,499 - Psyr_3876 0.71 -0.9
4,617,499 - Psyr_3876 0.71 -0.6
4,617,623 + Psyr_3876 0.88 +0.5
4,617,623 + Psyr_3876 0.88 +2.8
4,617,624 - Psyr_3876 0.88 +0.2
4,617,624 - Psyr_3876 0.88 +0.3
4,617,624 - Psyr_3876 0.88 -1.0
4,617,624 - Psyr_3876 0.88 -0.6
4,617,730 + -0.7
4,617,731 - +0.6
4,617,818 + +0.3
4,617,818 + +0.1
4,617,818 + -1.1
4,617,818 + +0.7
4,617,818 + -1.1
4,617,819 - -0.9
4,617,819 - -0.6
4,617,819 - +0.0
4,617,819 - +1.2
4,617,819 - -0.8
4,617,819 - -0.7
4,617,819 - +0.5
4,617,819 - -1.4

Or see this region's nucleotide sequence